Skip to content

Papers

Jump to bottom
marwan-abdellah edited this page Aug 19, 2024 · 5 revisions

NeuroMorphoVis Methods Papers

Core Papers

  • Abdellah, Marwan, Juan Hernando, Stefan Eilemann, Samuel Lapere, Nicolas Antille, Henry Markram, and Felix Schürmann. "NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks." Bioinformatics 34, no. 13 (2018): i574-i582.

If you use NeuroMorphoVis for your research, media design or other purposes, please cite this paper using the following entry:

@article{abdellah2018neuromorphovis,
  title={NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology 
  skeletons reconstructed from microscopy stacks},
  author={Abdellah, Marwan and Hernando, Juan and Eilemann, Stefan and Lapere, Samuel and Antille, 
  Nicolas and Markram, Henry and Sch{\"u}rmann, Felix},
  journal={Bioinformatics},
  volume={34},
  number={13},
  pages={i574--i582},
  year={2018},
  publisher={Oxford University Press}
}

Meshing Papers

  • Marwan Abdellah, Alessandro Foni, Juan José García Cantero, Nadir Román Guerrero, Elvis Boci, Adrien Fleury, Jay S Coggan, Daniel Keller, Judit Planas, Jean-Denis Courcol, Georges Khazen. "Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling ." Briefings in Bioinformatics, Volume 25, Issue 5, September 2024, bbae393.

  • Abdellah, Marwan, Juan José García Cantero, Alessandro Foni, Nadir Román Guerrero, Elvis Boci, and Felix Schürmann. "Meshing of Spiny Neuronal Morphologies using Union Operators." Computer Graphics and Visual Computing (CGVC) 2022, The Eurographics Association (2022).

  • Abdellah, Marwan, Cyrille Favreau, Juan Hernando, Samuel Lapere, and Felix Schürmann. "Generating high fidelity surface meshes of neocortical neurons using skin modifiers." Computer Graphics and Visual Computing (CGVC) 2019, The Eurographics Association (2019).

Application Papers

  • Abdellah, Marwan, Alessandro Foni, Eleftherios Zisis, Nadir Roman Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Henry Markram, and Felix Schürmann. "Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics." Bioinformatics 37, no. Supplement_1 (2021): i426-i433.

Navigation

Clone this wiki locally