Skip to content

Issues: deweylab/RSEM

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

127 Open 70 Closed
127 Open 70 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

rsem-extract-reference-transcripts fails with "Error Message: Strand is neither '+' nor '-'!"
#220 opened Aug 21, 2024 by J-Moravec
Single-end fragment length mean and SD
#219 opened Jul 30, 2024 by byqmed
Not sure if rsem is using --num-threads option...
#217 opened Jun 25, 2024 by siyer-broad
bam only containing aligned reads produced different expression profile
#216 opened May 24, 2024 by TwoFlowers1
rsem-generate-ngvector command not found
#215 opened May 3, 2024 by yma122
1
Gtf file
#212 opened Apr 1, 2024 by luisafmc
rsem-parse-alignments and rsem-build-read-index
#211 opened Mar 22, 2024 by project-FSL
rsem-prepare-reference arguments
#209 opened Feb 26, 2024 by baizhantianyu
error when using convert-sam-for-rsem to a RSEM compatible BAM file.
#208 opened Feb 18, 2024 by qxf1995
about gffcompare
#205 opened Oct 7, 2023 by fafuyyk
Problem implementing a reverse-strand specific analysis
#204 opened Aug 12, 2023 by sknaack
2
genomeSAsparseD option for RSEM Star?
#202 opened Jul 25, 2023 by Leelab-623
The SAM/BAM file declares less than one reference sequence!
#201 opened Jun 30, 2023 by Heterosigma
2
how to simulate single-end reads?
#200 opened Jun 9, 2023 by yhg926
import using tximport for the rsem count table to get integers?
#199 opened Jun 8, 2023 by marwa38
gene id
#198 opened May 29, 2023 by km-2021
rsem-calculate-expression
#197 opened May 17, 2023 by km-2021
single-cell-prior is not giving me any values
#196 opened May 16, 2023 by TdzBAS
1
to run RSEM for 3 samples
#195 opened May 3, 2023 by anitha-2211
1
No valid read to estimate the length distribution!
#194 opened Apr 10, 2023 by TdzBAS
1
rsem-prepare-reference with filtered GTF
#193 opened Apr 7, 2023 by TdzBAS
differential splicing simulation
#192 opened Mar 30, 2023 by TdzBAS
Does RSEM need HI:i:<n> tag to correctly process multimappers?
#191 opened Mar 21, 2023 by apredeus
2
Inconsistent results in rsem-plot-model
#190 opened Feb 24, 2023 by sschrstn
"make" error on mac (log attached)
#189 opened Sep 28, 2022 by thisisamirv
1
ProTip! Exclude everything labeled bug with -label:bug.