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rsem-generate-ngvector command not found #215

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yma122 opened this issue May 3, 2024 · 1 comment
Open

rsem-generate-ngvector command not found #215

yma122 opened this issue May 3, 2024 · 1 comment

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@yma122
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yma122 commented May 3, 2024

Hello,

I was in the process of using ebseq from my rsem isoform results and tried to run rsem-generate-ngvector but it says command not found. Has this command been renamed? Also, is it necessary to run it for all isoform-level DEG analyses, or just de novo assembled transcriptomes?

Thank you!
@GACGAMA
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GACGAMA commented Jun 19, 2024 •
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I have the same problem!
I installed rsem with conda.
I saw some info on bioconda github saying that they fixed for previous versions, so I`m not sure why this is happening the the newest 1.3.1v from bioconda.

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@GACGAMA @yma122