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@deweylab

Dewey Lab

The research group of Dr. Colin Dewey @ University of Wisconsin-Madison

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  1. RSEM RSEM Public

    RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

    C++ 424 118

  2. detonate detonate Public

    DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation

    C++ 11 4

  3. MetaSRA-pipeline MetaSRA-pipeline Public

    MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

    Python 42 14

  4. CellO CellO Public

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    Jupyter Notebook 65 13

Repositories

Showing 8 of 8 repositories
  • RSEM Public

    RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

    deweylab/RSEM’s past year of commit activity
    C++ 424 GPL-3.0 118 127 7 Updated Mar 13, 2024
  • MetaSRA-API-backend Public

    MetaSRA API + website back-end

    deweylab/MetaSRA-API-backend’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 5, 2023
  • MetaSRA-website-frontend Public

    MetaSRA: normalized metadata for the Sequence Read Archive

    deweylab/MetaSRA-website-frontend’s past year of commit activity
    HTML 1 BSD-3-Clause 0 5 0 Updated Dec 5, 2023
  • MetaSRA-pipeline Public

    MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

    deweylab/MetaSRA-pipeline’s past year of commit activity
    Python 42 BSD-3-Clause 14 266 1 Updated Dec 5, 2023
  • CellO Public

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    deweylab/CellO’s past year of commit activity
    Jupyter Notebook 65 MIT 13 7 3 Updated Jul 8, 2023
  • cell-type-classification-paper Public

    Code implementing experiments described in "Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells"

    deweylab/cell-type-classification-paper’s past year of commit activity
    Python 5 1 1 0 Updated Jul 10, 2020
  • deweylab.github.io Public

    The deweylab website

    deweylab/deweylab.github.io’s past year of commit activity
    HTML 1 0 0 0 Updated Sep 30, 2016
  • detonate Public

    DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation

    deweylab/detonate’s past year of commit activity
    C++ 11 4 7 0 Updated Jun 22, 2016

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