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Pull requests: DataBiosphere/azul

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Pull requests list

Hotfix prod: Some tallies in dcp55 failed to index due to non-disjuctive projects again (#7574) 0 reviews [process] Lead didn't request any changes hotfix [process] An PR with an urgent fix for prod no sandbox [process] PR will not be tested in the sandbox partial [process] PR is does not completely resolve associated ticket reindex:partial [process] PR allows for (de)indexing a specific source or catalog reindex:prod [process] PR requires reindexing prod
#7579 opened Nov 19, 2025 by achave11-ucsc Loading…
29 of 59 tasks
1
@achave11-ucsc
3
Hotfix anvilprod: Remove ANVIL_African_American_Seq_HGV from all AnVIL catalogs (DataBiosphere/azul-private#301) 0 reviews [process] Lead didn't request any changes hotfix [process] An PR with an urgent fix for prod reindex:anvilprod [process] PR requires reindexing anvilprod reindex:partial [process] PR allows for (de)indexing a specific source or catalog sandbox [process] Resolution is being verified in sandbox deployment
#7578 opened Nov 19, 2025 by achave11-ucsc Loading…
34 of 63 tasks
@achave11-ucsc
3
Add mirror URI column to compact manifest (#7151)
#7576 opened Nov 18, 2025 by nadove-ucsc • Draft 100+
1
@nadove-ucsc
3
Rename files.url to files.azul_file_url for AnVIL (#6549) hold warm [process] PR can't land just yet but needs to be rebased daily
#7568 opened Nov 12, 2025 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
6
Fix: IT does not cover downloads of mirrored files (#7531)
#7562 opened Nov 8, 2025 by nadove-ucsc • Draft 100+
1
@nadove-ucsc
2
Fix: Excessive bundle partitioning in AnVIL (#7528)
#7551 opened Nov 5, 2025 by nadove-ucsc • Draft 100+
1
@nadove-ucsc
2
Fix: Effective value of azul_current_{catalog,source} is not obvious (#7503) 0 reviews [process] Lead didn't request any changes
#7550 opened Nov 5, 2025 by nadove-ucsc Loading… 100+
1
@nadove-ucsc
8
Upgrade GitLab to Amazon Linux 2023 (#6160, 7218) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component
#7533 opened Oct 30, 2025 by achave11-ucsc • Draft 100+
2
@achave11-ucsc
2
Fix: OpenAPI spec does not document 429 responses (#7469) 3 reviews [process] Lead requested changes thrice API API change affecting callers
#7509 opened Oct 21, 2025 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
31
Configure mirroring per catalog and source (#7066) 1 review [process] Lead requested changes once API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod upgrade [process] PR includes commit requiring manual upgrade
#7304 opened Jul 23, 2025 by nadove-ucsc Loading… 100+
1
@nadove-ucsc
17
Fix: Manifest content hash computation times out (#6123) 3 reviews [process] Lead requested changes thrice API API change affecting callers
#7258 opened Jul 8, 2025 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
27
Enable mirroring in anvildev and anvilbox (#7154, #7214) 1 review [process] Lead requested changes once reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod
#7223 opened Jun 16, 2025 by nadove-ucsc Loading… 100+
2
@nadove-ucsc
9
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
107
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