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16 Open 40 Closed
16 Open 40 Closed
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Issues list

Merge lcms_dev into main branch of CoreMS
#54 opened May 9, 2024 by kheal
@kheal
Re-render documentation on lcms_dev branch on CoreMS
#53 opened May 9, 2024 by kheal
@kheal
Format lcms_dev branch according to PEP8 guidelines
#52 opened May 9, 2024 by kheal
@kheal
Update GC-MS workflow
#36 opened Mar 28, 2024 by smcolby
@smcolby
Add lipidomics workflow to MetaMS (cli, wdl)
#32 opened Mar 26, 2024 by kheal
7 tasks
@kheal @bmeluch
Document lipidomics workflow
#31 opened Mar 26, 2024 by kheal
4 tasks
@kheal @bmeluch
Benchmark lipidomics workflow and parameter optimization based on data in NMDC portal
#30 opened Mar 26, 2024 by kheal
@kheal
Design and enable metadata generation for lipidomics workflow berkeley-rollout-post-mvp-eligible does not block rolling out the MVP, still targeted for Oct
#29 opened Mar 26, 2024 by kheal
1 task done
@kheal @brynnz22
6
META ISSUE: Create lipidomics workflow
#28 opened Mar 26, 2024 by kheal
6 tasks done
@kheal
META ISSUE: Add modules and functions to CoreMS needed for lipidomics workflow
#27 opened Mar 26, 2024 by kheal
10 of 14 tasks
@kheal
1
LC-MS metabolomics WDL development and Github deployment backlog Not assigned to a sprint or not completed during an assigned sprint. Needs to be reprioritized. SMALL 1-3 days
#24 opened Sep 19, 2022 by ssarrafan
1 task
@corilo
11
LC-MS metabolomics CLI development backlog Not assigned to a sprint or not completed during an assigned sprint. Needs to be reprioritized. MEDIUM 4-7 days
#23 opened Sep 19, 2022 by ssarrafan
4 tasks
@corilo
12
Identify metadata components captured by DMS that are required when data is received from other institutions
#20 opened Aug 15, 2022 by ssarrafan
1
Collect metadata prep, QC, and Blanks / what is used at PNNL backlog Not assigned to a sprint or not completed during an assigned sprint. Needs to be reprioritized.
#18 opened Aug 15, 2022 by ssarrafan
1
Identify metadata components captured by DMS that are required when data is received from other institutions
#15 opened Aug 15, 2022 by ssarrafan
Collect metadata for how QC and Blanks are prepped / what is used at PNNL (October)
#13 opened Aug 15, 2022 by ssarrafan
ProTip! Adding no:label will show everything without a label.