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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 31 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • nmdc-field-notes Public

    Mobile app for metadata collection on the go

    microbiomedata/nmdc-field-notes’s past year of commit activity
    TypeScript 2 0 28 1 Updated Apr 8, 2025
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 0 0 34 0 Updated Apr 8, 2025
  • nmdc-edge Public

    Web-based interface to the NMDC EDGE platform

    microbiomedata/nmdc-edge’s past year of commit activity
    JavaScript 4 0 79 (1 issue needs help) 0 Updated Apr 8, 2025
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation’s past year of commit activity
    WDL 4 7 3 2 Updated Apr 8, 2025
  • metaT_Assembly Public

    workflow for metatranscriptome assembly

    microbiomedata/metaT_Assembly’s past year of commit activity
    WDL 0 0 2 0 Updated Apr 8, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 110 (3 issues need help) 15 Updated Apr 7, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 1 0 4 1 Updated Apr 7, 2025
  • issues Public

    public repo for issues related to NMDC work

    microbiomedata/issues’s past year of commit activity
    Jupyter Notebook 2 1 281 2 Updated Apr 7, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 149 19 Updated Apr 7, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 6 CC0-1.0 0 6 3 Updated Apr 7, 2025
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