LC-MS metabolomics WDL development and Github deployment

[ssarrafan]

LC-MS metabolomics WDL development

• Based on the CLI command for LC-MS data dependent data process, create a WDL workflow declaration and configuration json input file.

The workflow should be fully functional, able to process test datasets, and generate molecular table data products with putative metabolites annotation using mini wdl or cromwell based on the metaMS

[ssarrafan]

Hi @corilo. Any update on this issue? Can this issue be closed today or by Tuesday?

[ssarrafan]

Met with @corilo and he said this will continue to the next sprint.

[ssarrafan]

@corilo I'll move this to the next sprint. If you don't plan to work on it please let me know so I can remove it from the sprint board. Thanks.

[ssarrafan]

@corilo @lamccue I'll move this to the next sprint. If you don't plan to work on it please let me know so I can remove it from the sprint board. Thanks.

[ssarrafan]

@corilo is this still in progress and actively being worked on?

[ssarrafan]

Yuri is out the rest of the week so I will move this to the next sprint again. @lamccue let me know if I should move it to the backlog instead.

[ssarrafan]

Based on updates on Squad Lead meeting yesterday moving to the next squad. @corilo @shreddd

[ssarrafan]

Based on updates on Squad Lead meeting yesterday moving to the next squad. @corilo @shreddd

[ssarrafan]

@corilo Moving to current sprint. Please remove from sprint if you're not actively working on this.

[ssarrafan]

Emailed Yuri to get status. Will remove from sprint by Monday.

[ssarrafan]

@aclum said that Yuri mentioned in a meeting that he will not be working on this and focusing on the GROW data instead. I'm adding this to the backlog and removing from the sprint.