Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add lipidomics workflow to MetaMS (cli, wdl) #32

Open
7 tasks
kheal opened this issue Mar 26, 2024 · 0 comments
Open
7 tasks

Add lipidomics workflow to MetaMS (cli, wdl) #32

kheal opened this issue Mar 26, 2024 · 0 comments
Assignees

Comments

@kheal
Copy link
Collaborator

kheal commented Mar 26, 2024

This cannot be finished until CoreMS is updated with the LCMS modules.

Drafting subtasks

  • Write metaMS.lcmsLipidomicsWorkflow module
  • Update metaMS.cli module to source metaMS.lcmsLipidomicsWorkflow module
  • Update wdl to include second workflow for lcmsLipidomicsWorkflow
  • Change name of metams_input.json to specify that it is specific to the GCMS-metabolomics workflow
  • Add .json that is specific to the parameters for the LCMS-lipidomics workflow (similar to the exisiting metams_input.json file)
  • Add lipidomics workflow information to MetaMS Readme
  • Update dependencies to CoreMS 3.0
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants