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54 Open 122 Closed
54 Open 122 Closed
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Issues list

Do not upload mzmls on GitHub Actions. Instead upload meaningful intermediate data bug Something isn't working
#383 opened Jul 3, 2024 by jpfeuffer
1
quantms DIANN 1.9.1dev
#380 opened Jul 1, 2024 by ypriverol
8
quantms-utils and mokapot error bug Something isn't working enhancement New feature or request low-priority
#377 opened May 29, 2024 by ypriverol
@ypriverol @daichengxin
SDRF Parsing Error bug Something isn't working help wanted Extra attention is needed high-priority
#376 opened May 23, 2024 by jackrogan
@daichengxin
1
Moving bin scripts to library helper enhancement New feature or request
#375 opened May 20, 2024 by ypriverol
@ypriverol
Comet new version has been released Comet v2024.01.0 enhancement New feature or request
#371 opened May 7, 2024 by ypriverol
3 tasks
@ypriverol @timosachsenberg @daichengxin
2
the charge min and max and missclevages are sometimes not working bug Something isn't working
#364 opened Mar 25, 2024 by ypriverol
@ypriverol @timosachsenberg
@jpfeuffer @daichengxin
3
Defining more enzymes in OpenMS Comet adaptor enhancement New feature or request
#354 opened Feb 22, 2024 by ypriverol
@ypriverol
9
USI reported by quantms for DIANN experiments. bug Something isn't working dia analysis documentation Improvements or additions to documentation
#350 opened Jan 25, 2024 by ypriverol
3 tasks
@ypriverol @daichengxin @WangHong007
27
Open-search with quantms, use cases and workflow documentation Improvements or additions to documentation enhancement New feature or request high-priority open-search sage-support
#345 opened Jan 18, 2024 by ypriverol
8 tasks
@daichengxin
1
Test the impact and how the parameter num_hits works documentation Improvements or additions to documentation enhancement New feature or request high-priority release 1.3
#344 opened Jan 16, 2024 by ypriverol
@ypriverol @daichengxin
4
Bug with ConsensusID bug Something isn't working low-priority
#343 opened Jan 16, 2024 by ypriverol
@jpfeuffer
8
Big datasets more than 200 GB mztab size are not supported. bug Something isn't working high-priority
#342 opened Jan 16, 2024 by ypriverol
@daichengxin
We should dynamically configure some of the steps depending of the experiment size. bug Something isn't working enhancement New feature or request high-priority
#340 opened Jan 12, 2024 by ypriverol
3 tasks
@ypriverol @daichengxin
2
Improve the skip pre-analysis parameter logic dia analysis enhancement New feature or request
#337 opened Jan 10, 2024 by ypriverol
@ypriverol @daichengxin
2
Support for Phosphoproteomics datasets. documentation Improvements or additions to documentation enhancement New feature or request high-priority
#334 opened Jan 9, 2024 by ypriverol
10 tasks
@ypriverol
Plasma data LFQ failing bug Something isn't working
#332 opened Dec 24, 2023 by ypriverol
@timosachsenberg @jpfeuffer
1
DIA-NN - automated handling of challenging data enhancement New feature or request
#330 opened Dec 18, 2023 by michaelsteidel86
2
SAGE error in Big dataset TMT bug Something isn't working
#329 opened Dec 9, 2023 by ypriverol
@ypriverol @timosachsenberg @daichengxin
11
SAGE failing in big database bug Something isn't working
#327 opened Nov 23, 2023 by ypriverol
@ypriverol
13
Reports of quantms into tower enhancement New feature or request low-priority release 1.3
#309 opened Oct 23, 2023 by ypriverol Release 1.3
LFQ MBR FDR algorithm needed. enhancement New feature or request help wanted Extra attention is needed high-priority release 1.3
#303 opened Oct 13, 2023 by ypriverol
3 tasks
@timosachsenberg
8
TMT ProteinInference bug with SAGE bug Something isn't working
#299 opened Oct 4, 2023 by ypriverol
@ypriverol @jpfeuffer @daichengxin
1
More parameters for MSstats enhancement New feature or request help wanted Extra attention is needed high-priority
#283 opened Sep 15, 2023 by ypriverol
2 tasks
Bug with msstats and quantms bug Something isn't working
#280 opened Sep 13, 2023 by ypriverol
@ypriverol @daichengxin
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