Release 3.2.4

What's Changed

• Fix Rectangle kwarg error due to matplotlib==3.8 by @eleftherioszisis in #1082

Full Changelog: v3.2.3...v3.2.4

Release 3.2.3

What's Changed

• Remove duplicated deps jinja, sphinx by @stefanoantonel in #1043
• Remove single point contour somas in h5 and asc tests by @mgeplf in #1045
• Check that soma is not empty when features need it by @adrien-berchet in #1073
• Keep in sync with morphio 3.3.6, and the new SWC types that are avail… by @mgeplf in #1075
• Can pass List[Population] args to neurom.app.morph_stats.extract_dataframe by @adrien-berchet in #1076
• Fix neurom.app.morph_stats.extract_dataframe for Population objects with several workers by @adrien-berchet in #1080

New Contributors

• @stefanoantonel made their first contribution in #1043

Full Changelog: v3.2.0...v3.2.3

v3.2.2

What's Changed

• Fix QhullError warning by @GianlucaFicarelli in #1063

New Contributors

• @GianlucaFicarelli made their first contribution in #1063

Full Changelog: v3.2.1...v3.2.2

v3.2.1

What's Changed

• Remove duplicated deps jinja, sphinx by @stefanoantonel in #1043
• Remove single point contour somas in h5 and asc tests by @mgeplf in #1045
• Fix view cli by @arnaudon in #1051
• Fix coverage by @eleftherioszisis in #1056
• Fix: extract_stats could not work on single neurite by @adrien-berchet in #1060
• Fix language detection by @adrien-berchet in #1058

New Contributors

• @stefanoantonel made their first contribution in #1043

Full Changelog: v3.2.0...v3.2.1

v3.2.0

What's Changed

• Deprecate python3.6 by @eleftherioszisis in #976
• Add trunk_angles_inter_types feature and make trunk_angles more generic by @adrien-berchet in #965
• Remove dynamic test creation of _make_monotonic and _make_flat by @mgeplf in #980
• Use soma center in sholl_frequency distance calculation by @eleftherioszisis in #989
• Fix the trunk_origin_radii feature by @adrien-berchet in #986
• Fix sholl_frequency if neurite_type is not available by @eleftherioszisis in #990
• Make output file in morph_check mandatory by @eleftherioszisis in #992
• Fix doc of neurom.core.morphology.Neurite.iter_sections method by @adrien-berchet in #994
• Add volume density at the morphology level by @eleftherioszisis in #996
• Remove duplicate points in principal_direction_extents by @eleftherioszisis in #999
• Fix partition_asymmetry Uylings to not throw for bifurcations with leaves by @eleftherioszisis in #1001
• Make deprecation warnings respect pre-existing warnings configuration by @eleftherioszisis in #1002
• Standardize flatten iterator recipe by @eleftherioszisis in #1003
• Generalize partition asymmetry by @eleftherioszisis in #1006
• Fix principal direction extent calculation by @eleftherioszisis in #1008
• Implement new shape related features (placeholder features) by @eleftherioszisis in #1013
• Update neurom.features.get docstring with available builtin features by @eleftherioszisis in #1016
• Sort principal direction extents in descending order by @eleftherioszisis in #1017
• Return nan if no points found in shape features by @eleftherioszisis in #1018
• Fix: kwargs are unnecessarily updated in extract_stats by @adrien-berchet in #1020
• Allow using lists of kwargs in morph_stats features by @eleftherioszisis in #1021
• Implement new feature of length above soma by @eleftherioszisis in #1023
• Exit early if no points, to avoid hull warning by @eleftherioszisis in #1024

Full Changelog: v3.1.0...v3.2.0

v3.1.0

What's Changed

• Add new features total_width, total_height and total_depth by @eleftherioszisis in #974

Full Changelog: v3.0.2...v3.1.0

v3.0.2

What's Changed

• Add example astrocyte analysis notebook. by @pgetta in #957
• fix readthedocs build by @asanin-epfl in #958
• Update example astrocyte analysis notebook by @pgetta in #959
• Clean up the output when creating figures in example astrocyte analysis notebook by @pgetta in #960
• fix the link to the migration doc by @asanin-epfl in #961
• Improve astrocyte analysis notebook by @pgetta in #962
• Fix typo in astrocyte analysis notebook by @pgetta in #963
• fix raw option in morph_stat by @arnaudon in #964
• Delete all requirements txt files and update documentation accordingly by @asanin-epfl in #967
• replace outdated requirements_docs with docs extras by @asanin-epfl in #968
• Add jupyterlab-plotly extension to MyBinder postBuild by @pgetta in #970
• unifurcation check by @arnaudon in #972

New Contributors

• @pgetta made their first contribution in #957

Full Changelog: v3.0.1...v3.0.2

v3.0.1

• Ensure angle_between_vectors() always return 0 when the vectors are equal (#955)
• Add method to Soma class to check wether it overlaps a point or not (#956)

v3.0.0

• rename neuron to morphology
• refactor features
• refactor viewer
• allow pass arguments to neurom stats

See CHANGELOG.rst for more details on changes.

Fix 'sholl_frequency' feature for a neuron population

• better comments to Population (#938)
• fix _neuron_population for 'sholl_frequency' feature over a neuron population (#944)
• use a tuple for subplot default value in view.common.get_figure (#946)