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Releases: BlueBrain/NeuroM

Remove `NeuriteType.all` from `NEURITES`

15 Jun 09:46
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  • Use MorphIO specification for definitions doc page (#925)
  • Introduce a new method to calculate partition asymmetry by Uylings (#930)
  • document NEURITES (#932)
  • Follow the same rules of morphology validation as MorphIO (#934)
  • Remove the cli command neurom features (#933)
  • remove NeuriteType.all from NEURITES (#931)

Fix 'section_path_lengths' feature for Population (#927)

07 Jun 08:43
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v2.2.1

Fix 'section_path_lengths' feature for Population (#927)

v2.2.0: Don't force loading of neurons into memory (#922)

26 May 12:59
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  • Optimize Sholl analysis code (#905, #919)
  • Update documentation (#899, #907, #908, #911, #923, #917)
  • Include neuron filename extension into its name (#909)
  • Extend tree_type_checker to accept a single tuple as an argument. Additionally validate
    function's arguments (#912, #914)
  • fix test data path in examples (#916)
  • move 'total_length' feature to neuronfunc (#924)
  • Don't force loading of neurons into memory (#922)

Morphologies without soma

03 May 13:01
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  • allow for morphologies without soma (#900)

Fix custom neurite bug (introduce all custom neurites from MorphIO)

30 Apr 12:43
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  • clean imports (keep backward compatibility) (#898)
  • import plotly locally as it is an extra dependency (#901)
  • Account for all custom neurite types in NeuriteType (#902)
  • less pylint disables (#903)

Single cli entry under `neurom`

22 Apr 11:41
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  • Add push to codecov and run ci on master push (#895)
  • Update LICENSE.txt (#896)
  • nose to pytest, move all tests to 'tests' folder (#892)
  • Code cleaning of 'apps' package (#888)
  • Fix notebooks (#897)

NeuroM 2.0.1

16 Apr 16:20
368eb99
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Fix pypi version publishing (#893)

NeuroM 2.0

15 Apr 09:02
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Use MorphIO for reading/writing morphologies.

For the full list of changes see https://neurom.readthedocs.io/en/latest/migration_v2.html

v2.0.1.dev9

12 Apr 15:08
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v2.0.1.dev9 Pre-release
Pre-release
bump version to 2.0.1.dev9

Stop supporting h5v2

05 Mar 16:28
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Stop supporting h5v2 (#227) (#876)

If a h5v2 file is detected at loading time, the error message will point the user to the documentation for a way to convert it to h5v1.

https://github.com/BlueBrain/MorphIO#h5v2