v4.0.2

What's Changed

• Reduce soma volume measurement test precision by @eleftherioszisis in #1128
• Clean doc warnings by @mgeplf in #1124

Full Changelog: v4.0.1...v4.0.2

v4.0.1

What's Changed

• Allow axon-carrying-dendrite with fork axon subtrees by @eleftherioszisis in #1127

Full Changelog: v4.0.0...v4.0.1

v4.0.0: Axon carrying dendrite

This major release allows for statistics on mixed subtrees; for instance Axon Carrying Dendrites.
To support this, many changes were made, including:

• Morphology class accepts only morphio objects, not files anymore. (#1120)
• Replace iter_* methods by properties in core objects and improve iter_segments. (#1054)
• NeuriteType extended to allow mixed type declarations as tuple of ints. (#1071)
• All features return built-in types (#1064)
• Morphology class also allows mutable morphio objects to be passed explicitly. (#1049)
• Morphology class uses morphio immutable class by composition, istead of inheritance. (#979)
• Morphology level radial distance features use the somata as reference point. (#1030)
• Make neurom.core.Population resolve paths. Symlinks are not resolved. (#1047)
• Mixed subtree processing can be used in morph_stats app via the use_subtrees flag. (#1034)
• neurom.view.[plot_tree|plot_tree3d|plot_soma|plot_soma3D] were hidden from the
  neurom.view module. They can still be imported from neurom.view.matplotlib_impl. (#1032)
• Mixed subtree processing. (#981)
• Deprecated modules and classes were removed. (#1026)

Please note that this will require updates to software using NeuroM as a library.
There is a migration guide here: https://neurom.readthedocs.io/en/stable/migration.html
In addition, one can bound NeuroM's version to be <4 before migrating.
Note, however, that all development will be on the "v4" code base going forward.

v3.2.11

What's Changed

• Fix mpl.cm.get_cmap deprecation by @eleftherioszisis in #1122

Full Changelog: v3.2.10...v3.2.11

v3.2.10

What's Changed

• Add check for overlapping points in neurites by @adrien-berchet in #1115

Full Changelog: v3.2.9...v3.2.10

v3.2.9

What's Changed

• Add back_tracking_segments() which is then called by is_back_tracking by @adrien-berchet in #1112
• Add has_no_back_tracking function by @adrien-berchet in #1113
• Make has_no_back_tracking() compatible with generate_annotation() by @adrien-berchet in #1114

Full Changelog: v3.2.8...v3.2.9

v3.2.8

What's Changed

• Replace pkg_resources with importlib in docs by @eleftherioszisis in #1104
• fix sdist so pypi upload can happen by @mgeplf in #1105
• github action: fix var name for sdist upload by @mgeplf in #1106
• fix location of readme, update links for badges and banner by @mgeplf in #1107

Full Changelog: v3.2.7...v3.2.8

v3.2.7

What's Changed

• update contributors to match git logs by @mgeplf in #1100
• do not use master for github actions by @mgeplf in #1101

Full Changelog: v3.2.6...v3.2.7

v3.2.6

What's Changed

• update soma for new morphio 3.3.7 error by @mgeplf in #1089
• modernize to pyproject.toml by @mgeplf in #1088
• fix examples after move to v3 by @mgeplf in #1091
• Remove pyXX prefix for lint, docs, and coverage by @eleftherioszisis in #1092
• Fix warnings in tests by @eleftherioszisis in #1093
• Add proper spacing in morph_stats docstring config path by @eleftherioszisis in #1094
• Fix tutorial & add tutorial testing by @eleftherioszisis in #1095
• Add testing of example scripts (#1041) by @eleftherioszisis in #1096
• Add testing for python3.12 by @eleftherioszisis in #1098
• try updating .zenodo.json by @mgeplf in #1099

Full Changelog: v3.2.5...v3.2.6

Release 3.2.5

What's Changed

• Remove shebang lines by @musicinmybrain in #1083
• Replace PyPI mock test dependency with unittest.mock by @musicinmybrain in #1084
• Add Zenodo author list by @eleftherioszisis in #1086
• Set readthedocs python to a version we know we have morphio wheels for by @mgeplf in #1087

New Contributors

• @musicinmybrain made their first contribution in #1083

Full Changelog: v3.2.4...v3.2.5