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Releases: BlueBrain/NeuroM

features are now part of the `neurom.features` sub-package

13 Feb 12:40
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Moving features in features folder (#795)

* Moving features in features folder

- All features are moved to features/
- The sub-packages loose their underscore

Everything is still callable through the old fst/ path

Plotly drawer also accepts neurites

31 Jan 17:01
43287ad
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  • Plotly drawer also accepts neurites (#797)

  • Cast load_data 'handle' arg as string (#801)

  • faster path_distance computation (~2x) (#791)

  • The section color is chosen section by section (#787)

  • Reconcile mut_morphio and master a bit more (#794)

segment_areas and segment_path_lengths features

17 Jan 08:19
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  • Adding 2 features: segment_areas and segment_path_lengths (#789)

  • Suppress warnings from Tox output (#788)

Release v1.4.15

18 Nov 10:09
85ecefd
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Fix wrong import in plotly tutorial: #765 (#767)
Fix strahler.swc (#769)
Add PyPi classifiers in setup.py (#764)
Fix enum34 incompatibility with Python 3.6 (#771)
adding a banner to NeuroM readme (#774)
adding license badge (#775)
Refactor dendrogram (#780)
Add soma_volumes feature per soma type (#778)

Release v1.4.14

30 Jul 15:05
11e8e1c
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Add has_no_root_node_jumps check (#760)
Fix broken IDs in reversed_NRN_neurite_order.swc (#759)
Fix test file with wrong section types (#758)
Do not depends on add_child in tests (#756)
Bump scipy dependency (#757)
readthedocs: use site packages, when possible (#754)
wheel is required in pyproject.toml (#753)
readthedocs: add enum to install (#752)
reduce pyproject.toml deps (#751)
readthedocs: use python 2 (#750)
readthedocs: make sure the package gets installed (#749)
pin sphinx so it creates docs (#748)
Unpin plotly (#745)
Fix soma position on 2d plot (#744)
Update documentation (#737)
Skip spines (#738)
reduce error messages like: 'No handlers could be found for logger' (#734)

Fix ASC first point and dendrogram with neurites

20 Feb 09:09
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  • Last soma point is no longer first neurite point in ASC
  • Dendrogram now works when called with a neurite

Remove Numpy version upper bound

14 Feb 16:25
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And switch and linting is now done with Python 3.6 in Travis

morph_stats and morph_checks print their default config url

31 Jan 14:07
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When morph_stats and morph_checks are called without specifying a config,
the default one which is hard-coded is used. This commit puts the default
config in a yaml file and the url is displayed when used.
Benefits:

  1. People can see what's in the default config
  2. It can serve as an example when you have no idea how morph_check/stat work.

Remove distutils markers

31 Aug 13:30
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v1.4.10

Revert marker on enum34 for python >= 3.4

Release v1.4.9

30 Aug 11:55
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Changes:

  • Require 'enum34' only for Python<3.4
  • Create plotly module
  • Specify morph_stats example config path in help
  • Fix: Section type constants are shown as integers #697
  • 3-points contours are not longer interpreted as SomaThreePoint