Hexrays Toolbox - Find code patterns within the Hexrays ctree
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Updated
Jun 20, 2023 - Python
Hexrays Toolbox - Find code patterns within the Hexrays ctree
genetic variant expressions, annotation, and filtering for great good.
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
using all the bits for echt rapid variant annotation and filtering
A modular annotation tool for genomic variants
simuG: a general-purpose genome simulator
Arioc: GPU-accelerated DNA short-read alignment
non-redundant, compressed, journalled, file-based storage for biological sequences
A phenotype-based tool for variant prioritization in WES and WGS data
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
Atom is a novel intermediate representation for applications and a standalone tool that is powered by chen.
What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
visual analysis of your VCF files
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
High-level API for storing and querying sequence variant data
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
provides common tools and lookup tables used primarily by the hgvs and uta packages
R tools to interact with hap.py output
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