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@KarchinLab

KarchinLab

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  1. open-cravat Public

    A modular annotation tool for genomic variants

    JavaScript 120 31

  2. 2020plus Public

    Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

    Python 49 17

  3. mhcnuggets Public

    MHC Class I and Class II neoantigen binding prediction

    Python 29 12

  4. bigmhc Public

    BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity

    Jupyter Notebook 52 11

  5. pictograph Public

    A Bayesian hierarchical model to build tumor evolutionary trees

    R 5

  6. open-cravat-dxapp Public

    open-cravat-dxapp

    Python 1

Repositories

Showing 10 of 42 repositories
  • open-cravat-multiuser Public
    JavaScript 2 2 1 0 Updated Apr 21, 2025
  • open-cravat Public

    A modular annotation tool for genomic variants

    JavaScript 120 MIT 31 32 0 Updated Apr 21, 2025
  • oc_vignettes Public
    JavaScript 0 0 0 0 Updated Apr 18, 2025
  • open-cravat-modules-karchinlab Public
    JavaScript 0 MIT 9 1 1 Updated Apr 18, 2025
  • TCRtoolkit-Bulk Public

    A NextFlow pipeline for processing and analyzing TCRseq data

    Python 1 1 12 0 Updated Apr 8, 2025
  • SVCFit Public
    R 0 MIT 0 0 0 Updated Mar 25, 2025
  • open-cravat-extras Public
    Python 1 MIT 0 0 0 Updated Mar 23, 2025
  • SCHISM Public

    Subclonal Hierarchy Inference from Somatic Mutations

    Python 21 9 5 1 Updated Feb 25, 2025
  • open-cravat-readthedocs Public
    Python 1 4 1 0 Updated Dec 10, 2024
  • open-cravat-roadmap Public
    0 0 8 0 Updated Oct 29, 2024
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