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    1.4k repositories

    • nf-pooled-cellpainting-assets

      Public
      Python
      •0•0•2•0•Updated Aug 28, 2025Aug 28, 2025

    • seqr-helm

      Public
      Helm charts for the seqr project
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•3•2•0•Updated Aug 28, 2025Aug 28, 2025

    • gatk-sv

      Public
      A structural variation pipeline for short-read sequencing
      bioinformaticsgenomicsstructural-variationstructural-variants
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •78•193•87•32•Updated Aug 28, 2025Aug 28, 2025

    • carpenter-singh-lab-guide

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•1•Updated Aug 28, 2025Aug 28, 2025

    • gatk

      Public
      Official code repository for GATK versions 4 and up
      sciencebioinformaticsgenomicsgenomengssequencingdnasparkgatk
      Java
      •
      Other
      •610•1.8k•1.3k•141•Updated Aug 28, 2025Aug 28, 2025

    • hidive

      Public
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•6•1•Updated Aug 27, 2025Aug 27, 2025

    • seqr

      Public
      web-based analysis tool for rare disease genomics
      Python
      •
      GNU Affero General Public License v3.0
      •90•193•54•3•Updated Aug 27, 2025Aug 27, 2025

    • depmap-portal

      Public
      Code for the DepMap portal at depmap.org
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•8•0•12•Updated Aug 27, 2025Aug 27, 2025

    • rawls

      Public
      Rawls service for DSDE
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•25•0•5•Updated Aug 27, 2025Aug 27, 2025

    • warp

      Public
      Warp Analysis Research Pipelines
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •109•215•5•12•Updated Aug 27, 2025Aug 27, 2025

    • ops-terra-utils

      Public
      Python
      •3•6•0•2•Updated Aug 27, 2025Aug 27, 2025

    • pyops-service-toolkit

      Public
      Shared Python utilities that help with interacting with Terra, TDR, BigQuery, and GCP to name a few.
      Python
      •0•4•0•1•Updated Aug 27, 2025Aug 27, 2025

    • PANOPLY

      Public
      Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis Consortium (CPTAC)
      R
      •
      Other
      •16•37•0•1•Updated Aug 27, 2025Aug 27, 2025

    • gnomad-blog

      Public
      Blog for the gnomAD project
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•7•3•Updated Aug 27, 2025Aug 27, 2025

    • warp-tools

      Public
      This repository contains all containers that WARP uses.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•10•1•11•Updated Aug 27, 2025Aug 27, 2025

    • gnomad_qc

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •27•68•6•12•Updated Aug 27, 2025Aug 27, 2025

    • sam

      Public
      workbench identity and access management
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •12•41•3•7•Updated Aug 27, 2025Aug 27, 2025

    • cromwell

      Public
      Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
      dockerapplicationcloudbioinformaticsscalaexecutorhpccontainerswdlga4gh
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •373•1k•755•53•Updated Aug 27, 2025Aug 27, 2025

    • monorepo

      Public
      Compendium of tools for the Imaging Platform
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•15•4•2•Updated Aug 27, 2025Aug 27, 2025

    • juniper

      Public
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •5•9•0•18•Updated Aug 27, 2025Aug 27, 2025

    • dig-dug-portal

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•1•0•Updated Aug 27, 2025Aug 27, 2025

    • gnomad-browser

      Public
      Explore gnomAD datasets on the web
      javascriptgenomicsgnomad
      TypeScript
      •
      MIT License
      •50•84•163•7•Updated Aug 27, 2025Aug 27, 2025

    • cds-daintree

      Public
      Python
      •0•0•0•1•Updated Aug 27, 2025Aug 27, 2025

    • dig-aggregator-methods

      Public
      Monorepo of methods implemented for the Aggregator
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•8•Updated Aug 27, 2025Aug 27, 2025

    • gnomad-constraint

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated Aug 27, 2025Aug 27, 2025

    • firecloud-orchestration

      Public
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •4•31•0•1•Updated Aug 27, 2025Aug 27, 2025

    • ml4h-latentverse

      Public
      An open-source library for Latent Space Exploration (LSE)
      Python
      •
      MIT License
      •0•3•0•0•Updated Aug 27, 2025Aug 27, 2025

    • ml4h

      Public
      Python
      •
      Other
      •27•140•30•25•Updated Aug 27, 2025Aug 27, 2025

    • EmmaEmb

      Public
      Python
      •
      MIT License
      •3•15•0•0•Updated Aug 26, 2025Aug 26, 2025

    • backstage

      Public
      Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)
      TypeScript
      •0•2•0•0•Updated Aug 26, 2025Aug 26, 2025