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Pull requests: broadinstitute/warp

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15 Open 1,563 Closed
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Pull requests list

Rc 3109 zero
#1656 opened Aug 18, 2025 by rsc3 • Review required
3 tasks
9
Add an option to skip ATAC alignment to Multiome and ATAC
#1655 opened Aug 15, 2025 by jessicaway • Review required
3 tasks
3
Add initial version of Mitochondiral pipelines
#1654 opened Aug 15, 2025 by jessicaway • Approved
3 tasks
9
add new (smaller) dockers to AoU mito
#1653 opened Aug 15, 2025 by nikellepetrillo
3 tasks
2
POD-2836: Add new WDL to split multi-sample VCF into individual sample-level VCF files
#1649 opened Aug 12, 2025 by sahakiann • Review required
3 tasks
9
TSPS-416 ADD ArrayImputation QC Wdl
#1648 opened Aug 12, 2025 by jsotobroad • Review required
3 tasks
24
wdl reorg Sonnet 4 take 2
#1646 opened Aug 11, 2025 by rsc3 • Review required
3 tasks
9
Np add hla to warp
#1643 opened Aug 1, 2025 by nikellepetrillo • Review required
3 tasks
30
wdl repo org Sonnet 4 DO NOT MERGE
#1640 opened Jul 31, 2025 by rsc3 • Review required
3 tasks
6
NP Swap the location of ATAC barcodes with GEX barcodes
#1596 opened May 30, 2025 by nikellepetrillo • Review required
3 tasks
58
Np update truth paths DO NOT MERGE
#1572 opened Apr 15, 2025 by nikellepetrillo • Review required
3 tasks
59
Allow reblocking TDR/DRS VCFs
#1463 opened Jan 5, 2025 by kshakir • Review required
3 tasks
3
Update JointGenotyping.inputs.json
#1216 opened Feb 27, 2024 by ldgauthier • Review required
1 of 3 tasks
9
Add examples using public gs links from the broad-references-private sources
#997 opened Jun 1, 2023 by mr-c • Review required
5
Add option for requester pays into joint genotyper (import gvcf)
#846 opened Oct 23, 2022 by yfarjoun • Review required
6
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