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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 588

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 971 370

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 989 358

Repositories

Showing 10 of 1295 repositories
  • juniper0 Public

    Preliminary Version of JUNIPER: Large-Scale Outbreak Reconstruction

    broadinstitute/juniper0’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 29, 2024
  • ddp-study-server Public

    Pepper Study Server

    broadinstitute/ddp-study-server’s past year of commit activity
    Java 8 BSD-3-Clause 5 1 4 Updated Sep 29, 2024
  • juniper Public
    broadinstitute/juniper’s past year of commit activity
    Java 8 BSD-3-Clause 5 0 7 Updated Sep 29, 2024
  • molecular-data-provider Public

    Molecular Data Provider

    broadinstitute/molecular-data-provider’s past year of commit activity
    Python 11 MIT 7 3 5 Updated Sep 29, 2024
  • lrma-aou1-panel-creation Public

    Pipelines and evaluations covering integration, phasing, and imputation of short and structural variants for the AoU Phase 1 long-reads callset.

    broadinstitute/lrma-aou1-panel-creation’s past year of commit activity
    WDL 1 0 19 1 Updated Sep 29, 2024
  • hidive Public
    broadinstitute/hidive’s past year of commit activity
    Rust 0 BSD-3-Clause 0 3 2 Updated Sep 29, 2024
  • cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    broadinstitute/cromwell’s past year of commit activity
    Scala 989 BSD-3-Clause 358 741 47 Updated Sep 28, 2024
  • CTAT-LRF-Paper Public
    broadinstitute/CTAT-LRF-Paper’s past year of commit activity
    Roc 1 0 0 0 Updated Sep 28, 2024
  • thurloe Public

    A simple service to store arbitrary key/value pairs

    broadinstitute/thurloe’s past year of commit activity
    Scala 3 BSD-3-Clause 0 0 40 Updated Sep 28, 2024
  • sam Public

    workbench identity and access management

    broadinstitute/sam’s past year of commit activity
    Scala 42 BSD-3-Clause 12 3 93 Updated Sep 28, 2024
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