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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 5

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 236 repositories
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    0 0 0 1 Updated Jan 17, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 5 5 7 Updated Jan 17, 2025
  • Dragen-somatic Public

    The Dragen somatic variant calling workflow

    oicr-gsi/Dragen-somatic’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 16, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 1 Updated Jan 16, 2025
  • Dragen-germline Public

    workflow for running DRAGEN SNV caller in germline mode

    oicr-gsi/Dragen-germline’s past year of commit activity
    0 0 0 0 Updated Jan 15, 2025
  • dimsum Public

    QC Tracking dashboard

    oicr-gsi/dimsum’s past year of commit activity
    Java 1 GPL-3.0 0 0 2 Updated Jan 14, 2025
  • kallisto Public

    Quantifying abundances of transcripts from RNA-Seq data

    oicr-gsi/kallisto’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 14, 2025
  • optitype Public

    Workflow for HLA genotyping prediction with optitype

    oicr-gsi/optitype’s past year of commit activity
    WDL 0 0 0 0 Updated Jan 13, 2025
  • mutect2ConsensusTumorOnly Public

    The Mutect2Consensus workflow with only tumor inputs

    oicr-gsi/mutect2ConsensusTumorOnly’s past year of commit activity
    WDL 0 0 0 1 Updated Jan 13, 2025
  • Gaea Public

    Register genomics data in EGA

    oicr-gsi/Gaea’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 10, 2025
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