Skip to content

Issues: iobio/gene.iobio

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

57 Open 750 Closed
57 Open 750 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Problems with GRCh37 BAM files for mitochondrial DNA bug Something isn't working
#1128 opened Dec 10, 2024 by tonydisera 4.11.4
@tonydisera
Problem with showing IGV pileup for CRAM served from Nebula
#1127 opened Dec 5, 2024 by tonydisera 4.11.4
@tonydisera
28
Structural variants and tandem repeats
#1126 opened Dec 5, 2024 by Madelinehazel
Upgrade GeneModel.js to remove d3.dispatch dependency
#1125 opened Dec 2, 2024 by tonydisera 4.11.4
@tonydisera
Geneinfo service fails when chr = NaN (see gene KIR2DL2)
#1121 opened Nov 13, 2024 by tonydisera 4.11.4
@tonydisera
Geneinfo service should return empty results (an empty array) when the gene is not found
#1118 opened Nov 11, 2024 by tonydisera 4.11.4
@tonydisera
When gene already added and searched again, scroll to gene in left panel genes tab
#1117 opened Nov 11, 2024 by tonydisera 4.11.4
@tonydisera
Missing allele freq and clinvar annotations for variant on MT genes
#1115 opened Nov 5, 2024 by tonydisera 4.11.4
1
Set up 2-tier cache for multi-align bug Something isn't working
#1110 opened Sep 19, 2024 by tonydisera 4.11.4
@tonydisera
2
Handle alternate contigs in GRCh38 vcf and alignment files. enhancement New feature or request
#1108 opened Sep 16, 2024 by tonydisera 5.1
@tonydisera
4
Coverage glyphs on gene buttons are not getting refreshed when coverage cutoffs change applied
#1101 opened Aug 28, 2024 by tonydisera 4.11.4
@tonydisera
When switching between advanced and basic/simple mode, variant interpretation and notes are lost
#1100 opened Aug 28, 2024 by tonydisera 4.11.4
@tonydisera
New ClinVar classifications that will split CLINSIG into 3 separate classifications.
#1093 opened Aug 14, 2024 by tonydisera
Get rid of getClinvarVariantsV2, freebayesJointCallV2, and annotateVariantsV2 (and getClinvarVariants, freebayesJointCall, and annotateVariants.
#1088 opened Aug 6, 2024 by tonydisera 5.1
@tonydisera
globalApp as global mixin does not contain latest state
#1087 opened Aug 6, 2024 by tonydisera 5.1
@tonydisera
Annotate variants with SpliceAI, CADD, Mutscore, Alphamissense, Eve
#1083 opened Jul 2, 2024 by tonydisera
4 tasks
When gene is launched from Mosaic, warn user when required files not present
#1080 opened Jun 6, 2024 by tonydisera 5.1
@tonydisera
Bypassing unknown genes stops analysis?
#1076 opened Jun 3, 2024 by AlistairNWard
@tonydisera
1
Ensure ClinVar is filtering out significance terms
#1075 opened Jun 3, 2024 by AlistairNWard 4.11.4
@tonydisera
5
Order gene list on similarity to entered term (not alphabetically)
#1074 opened Jun 3, 2024 by AlistairNWard
2
Memory leaks in vue_pileup component
#1066 opened Apr 5, 2024 by tonydisera 5.1
When app launched from Mosaic, check for file conflicts when launching apps (e.g. multiple bam files exist) when experiment_id not provided
#1064 opened Apr 1, 2024 by tonydisera
@tonydisera
When app is launched from Mosaic, alert user with error if required file (vcf/tbi) are not found for given sample(s)
#1063 opened Apr 1, 2024 by tonydisera
@tonydisera
Use d3 forcelayout for variant pileup
#1062 opened Mar 30, 2024 by tonydisera
@tonydisera
Look into replacing xhr-stream-dl with a native fetch implementation
#1057 opened Mar 18, 2024 by anderspitman
@anderspitman
ProTip! Find all open issues with in progress development work with linked:pr.