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Sequence Data

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Robert J. Gifford edited this page Oct 16, 2024 · 13 revisions

HCV-GLUE contains reference sequences for HCV subtypes and genotypes.

Sequences are in GenBank XML format and are contained in this directory.

Reference sequences are defined in this csv file.

Clade definitions follow rules defined here.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Installation

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Schema Extensions
  4. Alignment Tree Concept
  5. Variations
  6. Scripting Layer

HCV Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Phylogenetic Trees

Usage

  1. Interacting with Projects
  2. Genotyping Tools
  3. Deep Sequencing Data Analysis

Web UI

  1. About the Web Version
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