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Phylogenetic Trees

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Robert J. Gifford edited this page Sep 27, 2024 · 6 revisions

A reference phylogeny was reconstructed to represent the evolutionary relationships between HCV reference sequences. The phylogeny was reconstructed using RAXML, via GLUE's raxmlPhylogenyGenerator module.

Phylogenies are here, a pdf version of the tree can be obtained/viewed here.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Installation

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Schema Extensions
  4. Alignment Tree Concept
  5. Variations
  6. Scripting Layer

HCV Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Phylogenetic Trees

Usage

  1. Interacting with Projects
  2. Genotyping Tools
  3. Deep Sequencing Data Analysis

Web UI

  1. About the Web Version
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