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Robert J. Gifford edited this page Oct 16, 2024 · 3 revisions

The HCV-GLUE core project provides a minimal set of essential data components for performing comparative genomic analysis of parvoviruses.

The data items included in the core project are:

  1. A set of HCV genome feature definitions covering all genera.

  2. An annotated reference genome sequence for each HCV genotype and subtype (i.e. one species per genus).

  3. A hierarchically arranged set of multiple sequence alignments representing sequence homology among HCV reference sequences.

  4. A reference phylogeny

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Installation

GLUE Concepts

  1. Project Data Model
  2. Command Layer
  3. Schema Extensions
  4. Alignment Tree Concept
  5. Variations
  6. Scripting Layer

HCV Core Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Phylogenetic Trees

Usage

  1. Interacting with Projects
  2. Genotyping Tools
  3. Deep Sequencing Data Analysis

Web UI

  1. About the Web Version
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