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Kp pytools to warptools pd 2186 #1026

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@kevinpalis kevinpalis commented Jun 26, 2023

We have already moved the custom python scripts and the docker file for the pytools image into warp-tools. We do not want to have duplicate code.

This PR will remove all usage of pytools in WARP and replace them with the latest warp-tools image that is semantically versioned (ie. not a test container). This also changes the path of the scripts in the container so a minor change to command calls is necessary.

Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP documentation team by tagging either @ekiernan or @kayleemathews in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

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Remember to squash merge!

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Hey @kevinpalis, would you mind making a couple of doc updates to go along with these changes? If you have any questions please let me know. Thanks so much!

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Remember to squash merge!

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Remember to squash merge!

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Remember to squash merge!

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Remember to squash merge!

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@kevinpalis Thanks for making those doc updates!

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github-actions bot commented Jul 5, 2023

Remember to squash merge!

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github-actions bot commented Jul 6, 2023

Remember to squash merge!

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github-actions bot commented Jul 7, 2023

Remember to squash merge!

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github-actions bot commented Jul 7, 2023

Remember to squash merge!

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github-actions bot commented Jul 7, 2023

Remember to squash merge!

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Remember to squash merge!

…ries that just won't work with a more recent python container
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