Release v53.1.9
clingen-sthlm
released this
30 Nov 09:19
·
1313 commits
to master
since this release
feat - add HiSeq RunParameters file parser (#2653)(MINOR)
Closes #2651. Creates a child class of RunParameters
that reads files from HiSeq sequencers, both 2500 and X. This is with the purpose of knowing the reads and index reads of the sequencing.
Added
- Class
RunParametersHiSeq
, implementing abstract methods from parent. - Constants to parse the elements from the XML file
- XMLError exception
- Test for new class
Changed
- Moved and renamed function
node_not_found
inRunParameters
class tocg/io/xml.py:validate_node_exists
- Replaced RunParametersError exception for XMLError in the validation of the nodes.
Fixed
- Removed unused sample sheets in fixtures