Release v69.1.7

Fix-dragen-cpu-and-exclusiveness (#4269) (patch)

Changed

• Improvements to sbatch header template:
  cg/apps/slurm/sbatch.py: Modified the DRAGEN_SBATCH_HEADER_TEMPLATE to allow dynamic partition allocation and exclusive memory and node allocation.
• Enhancements to Slurm API:
  cg/apps/slurm/slurm_api.py: Refined the generate_sbatch_content method to check for SbatchDragen instances instead of the Slurm.PARTITION attribute.
• Updates to sbatch model:
  cg/models/slurm/sbatch.py: Removed the nodes and cpus_per_task attributes from the SbatchDragen model to align with the new sbatch header template.

Release v69.1.6

add nallo to limitations table (#4264)

Added

• Nallo to statusDB limitations table

Release v69.1.5

Refactor Crunchy API (#4257) (patch)

Changed

• is_compression_pending is a property of CompressionData
• is_fastq_compression_possible is a property of CompressionData
• is_spring_decompression_possible is a property of CompressionData
• is_fastq_compression_done is a property of CompressionData
• is_spring_decompression_done is a property of CompressionData

Release v69.1.4

Allow for multiple smrt cell IDs (#4262) (patch)

Changed

• smrt_cell_ids parsed as a list in the pacbio sample sequencing metrics endpoint

Release v69.1.3

update nallo file paths (#4258) | patch

Changed

• update nallo file paths

Release v69.1.2

enhance slurm_priority property in case model (#4252)

Description

The Case property slurm_priority does not account for control samples and, therefore is not used in production. This PR makes this property usable in the Analysis API.

Added

Changed

• Made the qos of a case a model property instead of a function of the analysis API

Fixed

• Moved the test to the correct module

Release v69.1.1

Raredisease QC replace duplication check values (#4245)

Changed

• Raredisease use picardtools duplication rate output in metrics-deliver

Release v69.1.0

Fix(Orders) Add pattern for container_name (#4174)(minor)

Description

This PR adds validation that the container name follows the same pattern as the sample name.

Changed

• The container_name field now needs to adhere to the pattern ^[A-Za-z0-9_]*$

Release v69.0.1

Fix(Tomte upload) Skip upload if missing files (#4233)(patch)

Description

Optional files are causing the Tomte upload to crash. See #4232.

Fixed

• If the optional files do not exist, they are not uploaded

Release v69.0.0

Update to orderform 1508-34 (#4246)(major)

Description

Updates to orderform 1508-34
Closes #4218

Changed

• Version of the orderforms

Fixed

• Orderform fixtures