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Pull requests: Clinical-Genomics/cg

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Pull requests list

Add run_name to pacbio sequencing run model
#3795 opened Oct 1, 2024 by diitaz93 • Draft
15 tasks
1
Clean pacbio fixtures
#3794 opened Oct 1, 2024 by diitaz93 Loading…
15 tasks
@diitaz93
1
Add mip-rna option to json order form parser
#3793 opened Sep 30, 2024 by islean Loading…
15 tasks
2
add artefact loqusdb argument
#3792 opened Sep 30, 2024 by mathiasbio Loading…
7 of 14 tasks
1
Change creation and validation of OverrideCycles
#3787 opened Sep 27, 2024 by diitaz93 • Draft
15 tasks
1
@diitaz93
1
Add upload for raredisease to genotype
#3784 opened Sep 27, 2024 by rannick Loading…
15 tasks
@rannick
36
Feat(MicroFASTQ) Allow new excel sheet
#3777 opened Sep 26, 2024 by Vince-janv Loading…
1
9
DEV - Update pacbio flow to accept barcoded samples alembic migration Perform a change in database feature New feature
#3754 opened Sep 23, 2024 by diitaz93 • Draft
15 tasks
@diitaz93 @islean
22
#2396 get the latest archived flowcell
#3751 opened Sep 20, 2024 by RasmusBurge-CG Loading…
15 tasks
1
28
(Improve order flow) Add rnafusion workflow
#3749 opened Sep 19, 2024 by islean • Draft
15 tasks
1
refactor(deliver): clarify rsync function docstring for better understanding
#3746 opened Sep 18, 2024 by karlnyr Loading…
1 of 15 tasks
4
feat/connect order to Freshdesk ticket
#3620 opened Aug 21, 2024 by ahdamin • Draft
1
Add raredisease scout upload
#3591 opened Aug 16, 2024 by rannick Loading…
15 tasks
@rannick
45
feat/add freshdesk properties
#3576 opened Aug 15, 2024 by ahdamin Loading…
4
Refactor sample sheet service
#3504 opened Aug 1, 2024 by diitaz93 • Draft
15 tasks
1
2
Extend Lims sample model
#3473 opened Jul 28, 2024 by henrikstranneheim • Draft
15 tasks
@henrikstranneheim
1
Balsamic v16 release
#3408 opened Jul 8, 2024 by ivadym • Draft
2 of 21 tasks
@khurrammaqbool @mathiasbio
2
Remove pandas from gsaid api
#3393 opened Jul 4, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
16
feature(downsample api parameters)
#3329 opened Jun 10, 2024 by ChrOertlin • Draft
15 tasks
1
@ChrOertlin
20
add(oxford nanopore run devive model) alembic migration Perform a change in database
#3311 opened Jun 3, 2024 by ChrOertlin Loading…
15 tasks
1
Rename archive location
#3289 opened May 27, 2024 by islean • Draft
15 tasks
@islean
1
Add cleaning of old case directories
#3284 opened May 27, 2024 by islean Loading…
15 tasks
@islean
20
Update filename for software versions
#3240 opened May 17, 2024 by sofstam Loading…
15 tasks
4
Update use_read_count_threshold for taxprofiler
#3196 opened May 2, 2024 by sofstam Loading…
15 tasks
6
Update the lowest python version to 3.11 to include StrEnum
#3178 opened Apr 25, 2024 by samuell • Draft
12 tasks
1
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