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@clingen-sthlm clingen-sthlm released this 28 Nov 08:37
· 1361 commits to master since this release

Fix fastq tag assignment from spring file (#2710)(patch)

Closes #2709. To get the correct fastq file tags, this PR fetches the spring file by path, instead of fetching the first file that matched the sample bundle and the tag spring as it was done previously.

Added
Function get_file_insensitive_path to MockHousekeeperAPI
Changed
The function cg/meta/compress/compress.py:get_fastq_tag_names now receives for parameter a spring file path instead of a sample id. The spring file is fetched by the path given as parameter.
The function cg/meta/compress/compress.py:add_fastq_hk receives an additional parameter fastq_tags, which is generated using the function get_fastq_tag_names.
Fixed
The tests of the modified functions
Function get_file_insensitive_path of housekeeper API