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@clingen-sthlm clingen-sthlm released this 30 Nov 13:48
· 1309 commits to master since this release

catch sample sheet errors in sample sheet generation automation (#2720)(patch)

Flow cells with only single-index samples raise a SampleSheetError in the creation of their sample sheet, which is not caught and therefore blocks the automation.

This patch could be removed after the creation of sample sheets is refactored to only V2.

Added

  • SampleSheetError to the list of caught exceptions in the cli command cg demultiplex samplesheet create-all
  • A meaningful warning to the log when a sample sheet can't be created