Release v52.1.2
clingen-sthlm
released this
10 Nov 11:52
·
1347 commits
to master
since this release
fix(move error handling clean flow cells) (#2678) (patch)
Description
The CleanFlowCellAPI would raise an error and exit when no fastq files where found even if a sample would have spring files in housekeeper.
This was unintened with the relaxation of criteria.
To fix this:
A new function was added to the CleanFlowCellAPI
has_sample_fastq_or_spring_files_in_housekeeper
This function checks if all samples have either fastq files OR spring files and spring meta data files. If any sample does not have one or the other a HousekeeperFileMissingError is raised that will be propagated to the user.
Moved HousekeeperFilesMissingError into has_sample_fastq_or_spring_files_in_housekeeper
was previously in get_files_for_samples_on_flow_cell_with_tag