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Run panel PANELAPP-GREEN by default in all MIP runs #2700

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merged 10 commits into from
Dec 6, 2023
Merged

Run panel PANELAPP-GREEN by default in all MIP runs #2700

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2261494
Run panel PANELAPP-GREEN by default all MIP runs
beatrizsavinhas Nov 21, 2023
87ec747
Update cg/meta/workflow/mip.py
beatrizsavinhas Nov 23, 2023
97afe6e
Merge branch 'master' into add-PANELAPP-GREEN-to-mip
beatrizsavinhas Nov 29, 2023
462298e
Merge branch 'master' into add-PANELAPP-GREEN-to-mip
beatrizsavinhas Dec 6, 2023
6998587
Merge branch 'master' into add-PANELAPP-GREEN-to-mip
beatrizsavinhas Dec 6, 2023
3cf68fd
Update mip.py
beatrizsavinhas Dec 6, 2023
f529af3
Update mip.py
beatrizsavinhas Dec 6, 2023
b2fcb5f
Correcting test test_gene_panels_not_added
Dec 6, 2023
ccd21c9
Merge branch 'master' into add-PANELAPP-GREEN-to-mip
beatrizsavinhas Dec 6, 2023
3244ecc
Merge branch 'master' into add-PANELAPP-GREEN-to-mip
beatrizsavinhas Dec 6, 2023
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2 changes: 1 addition & 1 deletion cg/meta/workflow/mip.py
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Expand Up @@ -182,7 +182,7 @@ def convert_panels(customer: str, default_panels: list[str]) -> list[str]:
all_panels.add(extra_panel)

# add OMIM to every panel choice
all_panels.add(GenePanelMasterList.OMIM_AUTO)
all_panels.add(GenePanelMasterList.OMIM_AUTO.PANELAPP-GREEN)
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return list(all_panels)

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