Code

Stan and PyRenew model comparison doc#9

Code

Merged

damonbayer merged 40 commits intomainCDCgov/pyrenew-hew:mainfrom dmb_demo_model_compCDCgov/pyrenew-hew:dmb_demo_model_compCopy head branch name to clipboardSep 6, 2024

+866-3

Commits

Commits on Aug 22, 2024

• add files from pyrenew PR

  damonbayer

  committed
  d4e1984

  Copy full SHA for d4e1984

Commits on Aug 23, 2024

• change dirichlet prior

  damonbayer

  committed
  6c4d0d9

  Copy full SHA for 6c4d0d9

Commits on Aug 26, 2024

• Merge branch 'main' into hosp_only_ww_model

  damonbayer

  committed
  c14db7f

  Copy full SHA for c14db7f

• update linkes to ww-inference-model

  damonbayer

  committed
  34801cb

  Copy full SHA for 34801cb

• fix imports

  damonbayer

  committed
  f68cae1

  Copy full SHA for f68cae1

• fix function names and dirichlet variable import

  damonbayer

  committed
  da067b9

  Copy full SHA for da067b9

• actually use dirichlet distribution

  damonbayer

  committed
  bccae36

  Copy full SHA for bccae36

• fix stan data loading

  damonbayer

  committed
  768d67b

  Copy full SHA for 768d67b

Commits on Aug 27, 2024

• quarto deps

  damonbayer

  committed
  5f8b39e

  Copy full SHA for 5f8b39e

• rework model for updated ar process

  damonbayer

  committed
  bb7685e

  Copy full SHA for bb7685e

• let quarto demo render

  damonbayer

  committed
  6185d4a

  Copy full SHA for 6185d4a

• make pre-commit happy

  damonbayer

  committed
  103ab10

  Copy full SHA for 103ab10

• recommitting broken model with fewer changes

  damonbayer

  committed
  ccbe486

  Copy full SHA for ccbe486

• add polars dependency

  damonbayer

  committed
  78ee4d3

  Copy full SHA for 78ee4d3

• fixed model

  damonbayer

  committed
  5bf396b

  Copy full SHA for 5bf396b

• do forecasting

  damonbayer

  committed
  b5bb785

  Copy full SHA for b5bb785

Commits on Aug 28, 2024

• use DifferencedProcess directly

  damonbayer

  committed
  00139a2

  Copy full SHA for 00139a2

• Use compute_delay_ascertained_incidence

  damonbayer

  committed
  29d2721

  Copy full SHA for 29d2721

• add create_hosp_only_ww_model_from_stan_data

  damonbayer

  committed
  1200281

  Copy full SHA for 1200281

Commits on Aug 29, 2024

• use built in transformations

  damonbayer

  committed
  57b7ee5

  Copy full SHA for 57b7ee5

• add plotting module

  damonbayer

  committed
  0f3c875

  Copy full SHA for 0f3c875

• use new functions in notebook

  damonbayer

  committed
  119a4c6

  Copy full SHA for 119a4c6

• cleanup comment

  damonbayer

  committed
  4b6758b

  Copy full SHA for 4b6758b

• refactor for predictive plotting

  damonbayer

  committed
  1bacce0

  Copy full SHA for 1bacce0

• clean up some comments

  damonbayer

  committed
  c2b0512

  Copy full SHA for c2b0512

• Delete notebooks/hosp_only_ww_model.md

  damonbayer

  authored
  ee86c53

  Copy full SHA for ee86c53

• clean up imports

  damonbayer

  committed
  830376b

  Copy full SHA for 830376b

• clean up posterior plots

  damonbayer

  committed
  2f246a1

  Copy full SHA for 2f246a1

Commits on Aug 30, 2024

• save data

  damonbayer

  committed
  0f2436a

  Copy full SHA for 0f2436a

Commits on Sep 3, 2024

• checkin

  damonbayer

  committed
  d5b941f

  Copy full SHA for d5b941f

• Try reduced sigma_rt_prior

  damonbayer

  committed
  516120c

  Copy full SHA for 516120c

Commits on Sep 4, 2024

• update gitignore

  damonbayer

  committed
  32986c7

  Copy full SHA for 32986c7

• Create model_comp

  damonbayer

  committed
  4911aa2

  Copy full SHA for 4911aa2

• Remove model_comp.R

  damonbayer

  committed
  48e75d2

  Copy full SHA for 48e75d2

• add note about IHR length

  damonbayer

  committed
  4f56fb5

  Copy full SHA for 4f56fb5

• Add intro note

  damonbayer

  committed
  0767206

  Copy full SHA for 0767206

• Merge branch 'main' into dmb_demo_model_comp

  damonbayer

  authored
  e72427f

  Copy full SHA for e72427f

Commits on Sep 5, 2024

• Revert changes in notebooks/data/fit/stan_data.json

  damonbayer

  committed
  58a0d82

  Copy full SHA for 58a0d82

• update renv lockfile

  damonbayer

  committed
  a05435a

  Copy full SHA for a05435a

• Add note about running other notebooks first

  damonbayer

  committed
  3ec45c1

  Copy full SHA for 3ec45c1