Skip to content
@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

Pinned Loading

  1. cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 22 31

  2. template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 49

Repositories

Showing 10 of 458 repositories
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    Kotlin 79 CC0-1.0 45 1,265 121 Updated May 10, 2025
  • Python 2 Apache-2.0 0 20 2 Updated May 10, 2025
  • Julia 22 Apache-2.0 8 64 (3 issues need help) 10 Updated May 10, 2025
  • dibbs-ecr-viewer Public

    DIBBS eCR Viewer

    HTML 4 CC0-1.0 1 91 7 Updated May 10, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    Python 72 Apache-2.0 29 13 1 Updated May 10, 2025
  • tostadas Public

    🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

    Python 27 Apache-2.0 13 17 1 Updated May 9, 2025
  • MicrobeTrace Public Forked from AABoyles/MicrobeTrace

    The Visualization Multitool for Molecular Epidemiology and Bioinformatics

    TypeScript 92 Apache-2.0 43 151 10 Updated May 9, 2025
  • eMKF Public
    SAS 2 Apache-2.0 3 0 0 Updated May 9, 2025
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    Python 7 7 0 0 Updated May 9, 2025
  • Python 0 Apache-2.0 2 4 1 Updated May 9, 2025