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Remove time column from output #276

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merged 2 commits into from
Jan 7, 2025
Merged

Remove time column from output #276

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ddb0b32
remove time column
damonbayer Jan 7, 2025
12f28d9
fix test
damonbayer Jan 7, 2025
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1 change: 0 additions & 1 deletion hewr/R/process_state_forecast.R
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Expand Up @@ -45,7 +45,6 @@ combine_training_and_eval_data <- function(train_dat,
) |>
with_prop_disease_ed_visits() |>
dplyr::select(-"Total") |>
dplyr::mutate(time = dplyr::dense_rank(.data$date)) |>
tidyr::pivot_longer(
c("Disease", "Other", "prop_disease_ed_visits"),
names_to = "disease",
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1 change: 0 additions & 1 deletion hewr/tests/testthat/test_process_state_forecast.R
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Expand Up @@ -47,7 +47,6 @@ test_that("combine_training_and_eval_data works as expected", {

checkmate::assert_names(names(result),
permutation.of = c(
"time",
"date",
"data_type",
"disease",
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5 changes: 3 additions & 2 deletions pipelines/diagnostic_report/template.qmd
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Expand Up @@ -7,7 +7,7 @@ format:
- custom.scss
embed-resources: false
params:
model_dir_raw: "/home/xum8/pyrenew-hew/private_data/pyrenew-test-output/covid-19_r_2024-11-22_f_2024-08-19_t_2024-11-16/model_runs/MN/" # pragma: allowlist-secret
model_dir_raw: "/Users/damon/Documents/GitHub/pyrenew-hew/pipelines/tests/private_data/covid-19_r_2024-12-21_f_2024-10-22_t_2024-12-20/model_runs/CA" # pragma: allowlist-secret
---
<!-- Would like embed-resources to be true, but the current version is problematic with blobfuse -->

Expand Down Expand Up @@ -184,7 +184,8 @@ figure_save_tbl |>
```{r Rt Plot}
#| title: Posterior Rt
date_time_map <- combined_dat |>
distinct(time, date)
distinct(date) |>
mutate(time = dense_rank(date) - 1)

last_training_date <- combined_dat |>
dplyr::filter(data_type == "train") |>
Expand Down
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