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Use the sidebar to the right for information on how to use SuperSegger to segment, visualize and analyze your data.
For documentation on the code, sample datasets and a web trial version of SuperSegger you can also visit the SuperSegger website: http://mtshasta.phys.washington.edu/website/SuperSegger.php
Software features, capabilities and benchmarks are described in : Stylianidou, S., Brennan, C., Nissen, S. B., Kuwada, N. J., & Wiggins, P. A. (2016). SuperSegger: robust image segmentation, analysis and lineage tracking of bacterial cells. Molecular Microbiology, 102(4), 690-700. Please use this references for citation.
The gating capabilities of SuperSegger are described in : Cass, J. A., Stylianidou, S., Kuwada, N. J., Traxler, B. and Wiggins, P. A. (2017), Probing bacterial cell biology using image cytometry. Molecular Microbiology. doi:10.1111/mmi.13591 Please use these references for citation of the clist and gating capabilities of SuperSegger.
