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publication edit form properly handle biomodel and mathmodel ref ids #1281

Merged
merged 15 commits into from
Aug 13, 2024
Merged

publication edit form properly handle biomodel and mathmodel ref ids #1281

merged 15 commits into from
Aug 13, 2024

Commits on Aug 5, 2024

  1. add biomodelrefs to publication database testing in quarkus

    @jcschaff
    jcschaff committed Aug 5, 2024
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  2. less verbose Slurm logs

    @jcschaff
    jcschaff committed Aug 5, 2024
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  3. avoid null pointer exception in AnnotationsPanel

    @jcschaff
    jcschaff committed Aug 5, 2024
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  4. WIP: adding /publications/new and /publications/:pubId pages

    @jcschaff
    jcschaff committed Aug 5, 2024
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  5. nice /publications/new and /publications/:pubId but without model refs

    @jcschaff
    jcschaff committed Aug 5, 2024
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  6. update getBiomodelById in rest api to return 404 when not found

    @jcschaff
    jcschaff committed Aug 5, 2024
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  7. first pass at list of biomodels

    @jcschaff
    jcschaff committed Aug 5, 2024
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  8. fixed bug where BioModel query was wrong for PostgreSQL

    @jcschaff
    jcschaff committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. update github ubuntu runner to 22.04 and Python 10

    @jcschaff
    jcschaff committed Aug 6, 2024
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  2. update to Python 3.10, default for 22.04

    @jcschaff
    jcschaff committed Aug 6, 2024
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  3. clarify and test job scan coordinate to job index transformations

    @jcschaff
    jcschaff committed Aug 6, 2024
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  4. added command debugging for singularity

    @jcschaff
    jcschaff committed Aug 6, 2024
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Commits on Aug 12, 2024

  1. use smaller solver base image vcell-solvers:v0.8.1.3

    @jcschaff
    jcschaff committed Aug 12, 2024
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  2. delete publications with confirm dialog

    @jcschaff
    jcschaff committed Aug 12, 2024
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  3. formatting and error feedback for adding BioModels to publications

    @jcschaff
    jcschaff committed Aug 12, 2024
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