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@virtualcell

Virtual Cell

A Modeling and Simulation Environment for Cell Biology

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  1. vcell vcell Public

    Virtual Cell Framework

    Java 138 34

  2. vcell-fvsolver vcell-fvsolver Public

    VCell Finite Volume PDE solver

    C++ 2 1

  3. vcell-solvers vcell-solvers Public

    Virtual Cell solvers

    C 7 6

  4. vcell-fiji vcell-fiji Public

    A tool that loads VCell simulation results into ImageJ and performs statistical analysis.

    Java 2 1

  5. pyvcell pyvcell Public

    Python 3

  6. libvcell libvcell Public

    Java 1

Repositories

Showing 10 of 30 repositories
  • VCell-AI Public

    An AI-powered platform for discovering, analyzing, and exploring biomodels from the VCell database. Built as part of Google Summer of Code (GSoC25), this project combines modern web technologies with AI capabilities to provide an intuitive interface for scientific model research.

    virtualcell/VCell-AI's past year of commit activity
    TypeScript 14 MIT 14 24 28 Updated Sep 13, 2026
  • vcell Public

    Virtual Cell Framework

    virtualcell/vcell's past year of commit activity
    Java 138 34 284 (3 issues need help) 38 Updated Sep 11, 2026
  • vcell-fvsolver Public

    VCell Finite Volume PDE solver

    virtualcell/vcell-fvsolver's past year of commit activity
    C++ 2 1 1 3 Updated Sep 11, 2026
  • vcell-mbsolver Public

    Moving boundary solver standalone, linkable library and python bindings.

    virtualcell/vcell-mbsolver's past year of commit activity
    C 1 MIT 0 1 0 Updated Aug 29, 2026
  • vcell-hy3s Public

    Standalone repo for vcell hy3s solver

    virtualcell/vcell-hy3s's past year of commit activity
    C 0 MIT 0 0 1 Updated Aug 29, 2026
  • vcell-chombo Public
    virtualcell/vcell-chombo's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Aug 22, 2026
  • vcell-ode Public

    The ODE focused solvers VCell utilizes in it's main applications

    virtualcell/vcell-ode's past year of commit activity
    C 1 0 4 1 Updated Aug 21, 2026
  • vcell-expressionparser Public

    Virtual Cell Expression Parser submodule

    virtualcell/vcell-expressionparser's past year of commit activity
    C++ 0 MIT 0 0 0 Updated Aug 21, 2026
  • vcell-jhdf Public Forked from jamesmudd/jhdf

    Temporary fork of jamesmudd/jhdf carrying incremental + streaming chunk writing (upstream: jhdf#654 / PR jhdf#865). VCell pins tag 0.13.0-VCELL-1. See VCELL-FORK.md.

    virtualcell/vcell-jhdf's past year of commit activity
    Java 0 MIT 49 0 0 Updated Aug 20, 2026
  • vcell-jsbml Public Forked from sbmlteam/jsbml

    JSBML Fork For VCell

    virtualcell/vcell-jsbml's past year of commit activity
    Java 0 LGPL-2.1 27 0 0 Updated Aug 17, 2026
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