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@@ -10,13 +10,12 @@ RUN $JAVA_HOME/bin/jlink \ | |
--output /javaruntime | ||
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# Define base image and copy in jlink created minimal Java 17 environment | ||
FROM python:3.9.7-slim | ||
FROM ubuntu:jammy | ||
ENV JAVA_HOME=/opt/java/openjdk | ||
ENV PATH "${JAVA_HOME}/bin:${PATH}" | ||
COPY --from=jre-build /javaruntime $JAVA_HOME | ||
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# now we have Java 17 and Python 3.9 | ||
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ARG SIMULATOR_VERSION="7.5.0.11" | ||
ARG MAX_JAVA_MEM=0 | ||
# Make sure you don't sap all of docker's memory when you set this. | ||
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@@ -47,8 +46,11 @@ LABEL \ | |
about.tags="rule-based modeling,kinetic modeling,dynamical simulation,systems biology,BNGL,SED-ML,COMBINE,OMEX" \ | ||
maintainer="BioSimulators Team <[email protected]>" | ||
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RUN apt-get -y update | ||
RUN apt-get install -y --no-install-recommends curl dnsutils apt-utils libfreetype6 fontconfig fonts-dejavu | ||
ENV DEBIAN_FRONTEND noninteractive | ||
RUN apt -y update && apt install -y software-properties-common | ||
RUN add-apt-repository ppa:deadsnakes/ppa -y | ||
RUN apt install -y --no-install-recommends curl python3.9-full python3-pip build-essential dnsutils \ | ||
apt-utils libfreetype6 fontconfig fonts-dejavu | ||
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RUN mkdir -p /usr/local/app/vcell/lib && \ | ||
mkdir -p /usr/local/app/vcell/simulation && \ | ||
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