disable BMDB 595 (> 12 minutes runtime)

virtualcell · Dec 24, 2024 · 0cb5528 · 0cb5528
1 parent 0cc7637
commit 0cb5528
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/.github/workflows/NightlyBMDB_CLI.yml b/.github/workflows/NightlyBMDB_CLI.yml
@@ -180,8 +180,7 @@ jobs:
                   echo "Skipping ${file_name}"
                   continue
               fi
-              # if number is in the list of [125, 246, 678, 1008] then continue
-              if [ $number -eq 235 ] || [ $number -eq 255 ] || [ $number -eq 1008 ]; then
+              if [ $number -eq 235 ] || [ $number -eq 255 ] || [ $number -eq 595 ] || [ $number -eq 1008 ]; then
                   echo "Skipping ${file_name} - too slow or otherwise misbehaved"
                   continue
               fi

diff --git a/vcell-cli/src/main/resources/test_cases.ndjson b/vcell-cli/src/main/resources/test_cases.ndjson
@@ -676,7 +676,7 @@
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000572.omex","should_fail":false,"known_status":"PASS","known_failure_type":null,"known_failure_desc":null}
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000573.omex","should_fail":false,"known_status":"PASS","known_failure_type":null,"known_failure_desc":null}
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000574.omex","should_fail":false,"known_status":null,"known_failure_type":null,"known_failure_desc":null}
-{"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000575.omex","should_fail":false,"known_status":null,"known_failure_type":null,"known_failure_desc":null}
+{"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000575.omex","should_fail":false,"known_status":null,"known_failure_type":null,"known_failure_desc":"> 12 minutes - too long - skip it"}
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000576.omex","should_fail":false,"known_status":"PASS","known_failure_type":null,"known_failure_desc":null}
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000577.omex","should_fail":false,"known_status":"PASS","known_failure_type":null,"known_failure_desc":null}
 {"test_collection":"SYSBIO_BIOMD","file_path":"BIOMD0000000578.omex","should_fail":false,"known_status":null,"known_failure_type":null,"known_failure_desc":null}