Validate simulator version from GHCR to BioSimulators #12
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validate simulator version from GHCR to BioSimulators | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| tag_name: | |
| description: 'version tag' | |
| required: true | |
| default: 7.4.0.23 | |
| jobs: | |
| submit: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| # Submit to BioSimulators registry | |
| - name: Submit to BioSimulators registry | |
| run: | | |
| set -ux | |
| export SPEC_URL=https://github.com/${{ github.repository }}/releases/download/${{ github.event.inputs.tag_name }}/biosimulators.json | |
| docker pull ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }} | |
| IMAGE_DIGEST=$(docker image inspect ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }} | jq -r '.[0].RepoDigests[0]' | cut -d "@" -f 2-) | |
| curl \ | |
| -X POST \ | |
| -u ${{ secrets.ACTION_USER }}:${{ secrets.ACTION_TOKEN }} \ | |
| -H "Accept: application/vnd.github.v3+json" \ | |
| https://api.github.com/repos/biosimulators/Biosimulators/issues \ | |
| -d "{\"labels\": [\"Validate/submit simulator\"], \"title\": \"Submit VCell ${{ github.event.inputs.tag_name }}\", \"body\": \"---\nid: vcell\nversion: ${{ github.event.inputs.tag_name }}\nspecificationsUrl: $SPEC_URL\nspecificationsPatch:\n version: ${{ github.event.inputs.tag_name }}\n image:\n url: ghcr.io/virtualcell/biosimulators_vcell:${{ github.event.inputs.tag_name }}\n digest: \\\"${IMAGE_DIGEST}\\\"\nvalidateImage: true\ncommitSimulator: false\n\n---\"}" | |