unit test for NFsim

virtualcell · Jul 25, 2024 · 6886a0c · 6886a0c
1 parent 8b020bb
commit 6886a0c
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Showing 6 changed files with 40 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -19,3 +19,7 @@
 /all_solvers/*
 
 .DS_Store
+
+NFsim_v1.11/tests/data/SimID_273069657_0_.gdat
+
+NFsim_v1.11/tests/data/SimID_273069657_0_.species
diff --git a/NFsim_v1.11/CMakeLists.txt b/NFsim_v1.11/CMakeLists.txt
@@ -87,10 +87,14 @@ endif (UNIX)
 set(exe_target NFsim)
 if (ARCH_64bit) 
 	set(exe_target ${exe_target}_x64)
-endif (ARCH_64bit) 
+endif (ARCH_64bit)
+
+enable_testing()
 
 add_executable(${exe_target} ${SRC_FILES})
 target_link_libraries(${exe_target} vcommons vcellmessaging)
 
+add_test(NAME ${exe_target}_test2 COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/tests/test1.sh ${CMAKE_BINARY_DIR}/bin/${exe_target} WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/tests)
+
 install(TARGETS ${exe_target} RUNTIME DESTINATION ${OPTION_EXE_DIRECTORY})
 
diff --git a/NFsim_v1.11/tests/data/SimID_273069657_0_.gdat.expected b/NFsim_v1.11/tests/data/SimID_273069657_0_.gdat.expected
@@ -0,0 +1,12 @@
+#          time O0_MT0_tot_Count O0_MT1_tot_Count O0_MT2_tot_Count O0_MT3_tot_Count O0_MT4_tot_Count        s0_Count        s1_Count        s2_Count        s3_Count        s4_Count
+ 0.00000000e+00  6.02000000e+02  9.03000000e+02  1.20400000e+03  0.00000000e+00  0.00000000e+00  6.02000000e+02  9.03000000e+02  1.20400000e+03  0.00000000e+00  0.00000000e+00
+ 1.00000000e-01  5.37000000e+02  9.68000000e+02  1.13900000e+03  0.00000000e+00  0.00000000e+00  5.37000000e+02  9.68000000e+02  1.13900000e+03  0.00000000e+00  0.00000000e+00
+ 2.00000000e-01  5.24000000e+02  9.81000000e+02  1.12600000e+03  0.00000000e+00  0.00000000e+00  5.24000000e+02  9.81000000e+02  1.12600000e+03  0.00000000e+00  0.00000000e+00
+ 3.00000000e-01  5.23000000e+02  9.82000000e+02  1.12500000e+03  0.00000000e+00  0.00000000e+00  5.23000000e+02  9.82000000e+02  1.12500000e+03  0.00000000e+00  0.00000000e+00
+ 4.00000000e-01  5.30000000e+02  9.75000000e+02  1.13200000e+03  0.00000000e+00  0.00000000e+00  5.30000000e+02  9.75000000e+02  1.13200000e+03  0.00000000e+00  0.00000000e+00
+ 5.00000000e-01  5.23000000e+02  9.82000000e+02  1.12500000e+03  0.00000000e+00  0.00000000e+00  5.23000000e+02  9.82000000e+02  1.12500000e+03  0.00000000e+00  0.00000000e+00
+ 6.00000000e-01  5.21000000e+02  9.84000000e+02  1.12300000e+03  0.00000000e+00  0.00000000e+00  5.21000000e+02  9.84000000e+02  1.12300000e+03  0.00000000e+00  0.00000000e+00
+ 7.00000000e-01  5.20000000e+02  9.85000000e+02  1.12200000e+03  0.00000000e+00  0.00000000e+00  5.20000000e+02  9.85000000e+02  1.12200000e+03  0.00000000e+00  0.00000000e+00
+ 8.00000000e-01  5.13000000e+02  9.92000000e+02  1.11500000e+03  0.00000000e+00  0.00000000e+00  5.13000000e+02  9.92000000e+02  1.11500000e+03  0.00000000e+00  0.00000000e+00
+ 9.00000000e-01  5.13000000e+02  9.92000000e+02  1.11500000e+03  0.00000000e+00  0.00000000e+00  5.13000000e+02  9.92000000e+02  1.11500000e+03  0.00000000e+00  0.00000000e+00
+ 1.00000000e+00  5.33000000e+02  9.72000000e+02  1.13500000e+03  0.00000000e+00  0.00000000e+00  5.33000000e+02  9.72000000e+02  1.13500000e+03  0.00000000e+00  0.00000000e+00