Learning the Variant Call Format

A python parser to simplify and build the VCF (Variant Call Format).

tips and tricks in genome-wide association studies - a tutorial

Scripts in R for Landscape Genomics Analyses v.2

Repository for Blog Article on Parsing with cyvcf2. Article ==>

Allows one to manipulate a VCF as a MultiIndex Pandas DataFrame

Variant annotation and filtration server ALAPY Genome Explorer

A .NET vCard parser with Android contacts2.db and MeCard support

Useful NGS utilities for everyday use in the form of stand-alone tool.

summarize and visualize the genotypes categories per sample in a VCF file

Vcard generator library for PHP

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

Form interface so users can custom filter existing VCF files and export in a variety of formats.

VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already exist in vcftools, but it seems it stopped being updated. so you can use these scripts to do various tasks with them

Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.

A public, web-based homozygosity mapping tool

A program for fixing TASSEL produced GBS VCFs so that they are coded reference-alternate

Processing text files and converting them into a VCF file form which contacts can be imported to the mobile phone

Example files for Benin NGS capacity building project

bcftools singularity container