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10 public repositories
matching this topic...
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Jul 7, 2023
Python
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
MBEToolbox: Matlab toolbox for molecular evolution
File conversion scripts for DNA sequence data
Updated
Apr 19, 2021
Python
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
Updated
Apr 12, 2018
Python
API to read, write, and filter DNA sequence alignment files
Updated
Nov 13, 2024
Python
A nextflow pipeline which executes treemix on a population of interest
Updated
Aug 3, 2023
Nextflow
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
Updated
Jan 20, 2021
Python
Easy Manipulation of Multiple Sequence Alignments (Concatenation and Format Conversion)
Updated
May 26, 2017
Python
Repository with Phylip 3.697 with binaries for Apple Silicon
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