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11 public repositories
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A Go package for engineering organisms.
This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".
Pipeline for building topologically-constrained phylogenies from DNA barcode data
Updated
Dec 9, 2024
Python
An R package for pre-processing and error evaluation of COI-5P barcode data
Updated
Aug 5, 2023
Python
DNA barcoding analysis pipeline
Updated
Jul 20, 2023
Python
A sequence-by-sequence denoiser for COI DNA barcode and metabarcode data
Files from DIMACS 2007 DNA barcoding challenge
Bioinformatic processes used to obtain invertebrate DNA barcodes from Illumina sequencing output
Updated
May 19, 2022
Python
Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.
Updated
Jun 2, 2022
Python
Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.
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