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71 Open 136 Closed
71 Open 136 Closed
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Issues list

question about Chapter16.4 Pseudobulk making code bug Something isn't working
#339 opened Feb 19, 2025 by dfc-1931475
1
Create a style guide enhancement New feature or request
#337 opened Feb 18, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
Missing yml files for every chapter/notebook enhancement New feature or request
#336 opened Feb 17, 2025 by LuisHeinzlmeier
File format chapter enhancement New feature or request
#334 opened Feb 15, 2025 by LuisHeinzlmeier
1
Verbosity Level bug Something isn't working
#332 opened Feb 14, 2025 by DarioS
1
Add SpatialData & squidpy tutorial to Analysis tools enhancement New feature or request
#330 opened Feb 7, 2025 by Zethson
6 tasks
@LuisHeinzlmeier
Adding tables enhancement New feature or request
#328 opened Feb 4, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
1
Figure for UMI resolution enhancement New feature or request
#323 opened Feb 2, 2025 by LuisHeinzlmeier
@LuisHeinzlmeier
Outdated environemnt files bug Something isn't working
#319 opened Jan 20, 2025 by VladimirShitov
2
Issue on page /cellular_structure/integration.html
#308 opened Jan 5, 2025 by qinxiaoy
Issue on page /preprocessing_visualization/quality_control.html
#306 opened Nov 12, 2024 by jffpviana
Downstream analysis for sn-ATACseq is not shown in the contents? question Further information is requested
#304 opened Nov 10, 2024 by zyll123
Issue on page /conditions/perturbation_modeling.html
#302 opened Nov 4, 2024 by Dexterssssss
Have hide-output and expandable cells enhancement New feature or request
#299 opened Sep 21, 2024 by Zethson
Filter rarely expressed genes/features? question Further information is requested
#298 opened Sep 17, 2024 by kloot
Question about the ambient RNA correction question Further information is requested
#296 opened Aug 22, 2024 by Chaosli98
1
Usage of pvals for volcano plots instead of FDR-corrected p-values question Further information is requested
#295 opened Aug 21, 2024 by ramadatta
SoupX: rowSums(data) : 'x' must be an array of at least two dimensions bug Something isn't working
#294 opened Aug 13, 2024 by Urja25
How can one use an independent reference for training and mapping using scArches? Issue on page /cellular_structure/annotation.html
#293 opened Aug 9, 2024 by yojetsharma
Issue on page /chromatin_accessibility/quality_control.html
#288 opened Jul 25, 2024 by trev-f
@AnnaChristina
Better sorting of pathways in /conditions/gsea_pathway.html?
#287 opened Jul 24, 2024 by VladimirShitov
Update ATAC-seq section with: Benchmarking computational methods for single-cell chromatin data analysis enhancement New feature or request
#286 opened Jul 19, 2024 by ivirshup
@Zethson
1
Issue on page /mechanisms/gene_regulatory_networks.html about env and versions of packages
#285 opened Jul 18, 2024 by franvz9
TypeError: metaclass conflict: the metaclass of a derived class must be a (non-strict) subclass of the metaclasses of all its bases bug Something isn't working
#278 opened May 28, 2024 by ngvananh2508
Issue on page /preprocessing_visualization/quality_control.html
#275 opened May 17, 2024 by emiliosk
@AnnaChristina
ProTip! Find all open issues with in progress development work with linked:pr.