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1. single-cell-tutorial single-cell-tutorial Public

   Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

   Jupyter Notebook 1.3k 443

2. single-cell-best-practices single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 684 149

3. scvelo scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 397 102

4. scarches scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 321 50

5. cellrank cellrank Public

   CellRank: dynamics from multi-view single-cell data

   Python 324 42

6. scib scib Public

   Benchmarking analysis of data integration tools

   Python 282 61