0.2.0 🌈

Changes

🚀 Features

• Important cookietemple template update 2.1.0 released! (#343) @Zethson
• add chronic kidney disease dataloader (#301) @xinyuejohn
• dataloader for diabetes dataset (#292) @HorlavaNastassya
• #321: Add X_only option for reading (#380) @Imipenem
• MedCAT API improvements & function renaming (#381) @Zethson
• minor changes (#379) @xinyuejohn
• add functions related to survival analysis (#371) @xinyuejohn
• MedCat [#101]: extract biomedical concepts/entities from (free) text (#367) @Imipenem
• Add heart dataset to docs (#377) @xinyuejohn
• add heart disease data set to ehrapy (#376) @xinyuejohn
• add highly_variable_features (#364) @xinyuejohn
• add SoftImpute and IterativeSVD to imputation (#353) @xinyuejohn
• [#307] Improve KNN with n_neighbours parameter (#365) @Imipenem
• add furo theme & switch to markdown (#359) @Zethson
• add several datasets and change Docstring examples (#355) @xinyuejohn
• Add ability to compare laboratory measurements to reference values (#352) @Zethson
• [Feature] New read API #263 (#351) @Imipenem
• [Feature] Set index column #305 (#350) @Imipenem
• Add encoded parameter to all new datasets amd fix import (#336) @xinyuejohn
• [FEATURE] #314: Autodetect binary (0,1) columns (#327) @Imipenem
• [FEATURE] Display QC metrics of var #239 (#323) @Imipenem
• Add several dataset loaders (#322) @xinyuejohn
• [FEATURE] Improve type_overview #306 (#308) @Imipenem
• Feature/deep translator integration (#303) @MxMstrmn
• remove CLI module (#298) @Zethson
• Improve missforest interface (#284) @Zethson
• Add example calls and preview images to all plotting functions (#289) @xinyuejohn
• add heart failure dataloader (#291) @Zethson
• add highly_variable_features (#364) @xinyuejohn
• add SoftImpute and IterativeSVD to imputation (#353) @xinyuejohn
• add furo theme & switch to markdown (#359) @Zethson

🐛 Bug Fixes

• [FIX] #255: Encode mutates input adata object (#348) @Imipenem
• [FIX] Write .h5ad files (#347) @Imipenem
• Fix #331: Improved autodetect docs (#344) @Imipenem
• Add encoded parameter to all new datasets amd fix import (#336) @xinyuejohn
• [FIX] Autodetect encode + specify encode mode for autodetect (#310) @Imipenem

🧰 Maintenance

• MedCAT API improvements & function renaming (#381) @Zethson
• add functions related to survival analysis (#371) @xinyuejohn
• MedCat [#101]: extract biomedical concepts/entities from (free) text (#367) @Imipenem
• Add heart dataset to docs (#377) @xinyuejohn
• remove CLI module (#298) @Zethson

📦 Dependencies

• [DEPENDABOT]: Bump codecov/codecov-action from 3.0.0 to 3.1.0 (#378) @dependabot
• [DEPENDABOT]: Bump codecov/codecov-action from 2.1.0 to 3.0.0 (#368) @dependabot
• [DEPENDABOT]: Bump actions/cache from 2.1.7 to 3 (#358) @dependabot
• [DEPENDABOT]: Bump actions/upload-artifact from 2.3.1 to 3 (#339) @dependabot
• [DEPENDABOT]: Bump actions/checkout from 2 to 3 (#340) @dependabot
• [DEPENDABOT]: Bump actions/download-artifact from 2.1.0 to 3 (#341) @dependabot
• [DEPENDABOT]: Bump ipython from 7.31.1 to 7.32.0 (#330) @dependabot
• [DEPENDABOT]: Bump actions/setup-python from 2 to 3 (#328) @dependabot
• [DEPENDABOT]: Bump deepl from 1.4.1 to 1.5.0 (#329) @dependabot
• [DEPENDABOT]: Bump coverage from 6.3.1 to 6.3.2 (#317) @dependabot
• [DEPENDABOT]: Bump click from 8.0.3 to 8.0.4 (#318) @dependabot
• [DEPENDABOT]: Bump types-requests from 2.27.8 to 2.27.9 (#311) @dependabot
• [DEPENDABOT]: Bump pytest from 7.0.0 to 7.0.1 (#312) @dependabot
• [DEPENDABOT]: Bump sphinx-autodoc-typehints from 1.16.0 to 1.17.0 (#313) @dependabot