Removed unused dependencies (#615)

* Removed unused dependencies Signed-off-by: zethson <[email protected]> * Tutorials update Signed-off-by: zethson <[email protected]> --------- Signed-off-by: zethson <[email protected]>
theislab · Nov 22, 2023 · f632773 · f632773
1 parent 20625f9
commit f632773
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Showing 3 changed files with 16 additions and 35 deletions.
diff --git a/docs/tutorials/notebooks b/docs/tutorials/notebooks
diff --git a/ehrapy/core/meta_information.py b/ehrapy/core/meta_information.py
@@ -4,51 +4,34 @@
 from contextlib import closing
 from datetime import datetime
 from io import StringIO
+from typing import IO, Optional
 
 import session_info
-from IPython.utils.io import Tee
 from rich import print
 
 from ehrapy import __version__
 from ehrapy.logging import _versions_dependencies
 
 
-def print_versions(*, output_file=None) -> None:  # pragma: no cover
+def print_versions():  # pragma: no cover
     """Print print versions of imported packages.
 
-    Args:
-        output_file: Path to output file
-
     Examples:
         >>> import ehrapy as ep
         >>> ep.print_versions()
     """
-    stdout = sys.stdout
-    try:
-        buf = sys.stdout = StringIO()
-        session_info.show(
-            dependencies=True,
-            excludes=[
-                "builtins",
-                "stdlib_list",
-                "importlib_metadata",
-                # Special module present if test coverage being calculated
-                # https://gitlab.com/joelostblom/session_info/-/issues/10
-                "transformers",
-                "$coverage",
-            ],
-            write_req_file=False,
-            html=False,
-        )
-    finally:
-        sys.stdout = stdout
-    output = buf.getvalue()
-
-    if output_file:
-        with closing(Tee(output_file, "w", channel="stdout")):
-            print(output)
-    else:
-        print(output)
+    session_info.show(
+        dependencies=True,
+        html=False,
+        excludes=[
+            "builtins",
+            "stdlib_list",
+            "importlib_metadata",
+            # Special module present if test coverage being calculated
+            # https://gitlab.com/joelostblom/session_info/-/issues/10
+            "$coverage",
+        ],
+    )
 
 
 def print_version_and_date(*, file=None):  # pragma: no cover

diff --git a/pyproject.toml b/pyproject.toml
@@ -50,10 +50,9 @@ dependencies = [
     "requests",
     "scikit-learn",
     "category_encoders",
-    "deepl",
     "pynndescent",
-    "ipython",
     "deep-translator",
+    "deepl",
     "scikit-learn-intelex",
     "fancyimpute",
     "miceforest",
@@ -62,7 +61,6 @@ dependencies = [
     "lifelines",
     "missingno",
     "thefuzz[speedup]",
-    "tabulate",
     "fhiry",
     "dowhy"
 ]
+108 −197		diabetic_retinopathy_fate_mapping.ipynb
+1 −1		ehrapy_introduction.ipynb
+2 −4		mimic_2_causal_inference.ipynb
+4 −4		mimic_2_fate.ipynb
+7 −7		mimic_2_introduction.ipynb
+23 −23		mimic_2_survival_analysis.ipynb
+58 −58		ml_usecases.ipynb