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updated tests to check for .uns ( should be removed later, when the u…
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…nivariates are updated )
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aGuyLearning committed Jan 8, 2025
1 parent 38f4efb commit 501b864
Showing 1 changed file with 11 additions and 3 deletions.
14 changes: 11 additions & 3 deletions tests/tools/test_sa.py
Original file line number Diff line number Diff line change
Expand Up @@ -84,15 +84,23 @@ def test_anova_glm(self):
assert dataframe.iloc[1, 4] == 2
assert pytest.approx(dataframe.iloc[1, 5], 0.1) == 0.103185

def _sa_function_assert(self, model, model_class):
def _sa_function_assert(self, model, model_class, adata=None):
assert isinstance(model, model_class)
assert len(model.durations) == 1776
assert sum(model.event_observed) == 497

def _sa_func_test(self, sa_function, sa_class, mimic_2_sa):
if adata is not None:
model_summary = adata.uns.get("test")
assert model_summary is not None
assert model_summary.equals(model.summary)

def _sa_func_test(self, sa_function, sa_class, mimic_2_sa, regression=False):
adata, duration_col, event_col = mimic_2_sa
if regression:
sa = sa_function(adata, duration_col=duration_col, event_col=event_col, uns_key="test")
else:
sa = sa_function(adata, duration_col=duration_col, event_col=event_col)

sa = sa_function(adata, duration_col=duration_col, event_col=event_col)
self._sa_function_assert(sa, sa_class)

def test_kmf(self, mimic_2_sa):
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